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Social insect colony size is correlated with rates of substitution and DNA repair gene evolution

https://doi.org/10.1101/415570
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Biological basis of germline mutation: Comparisons of spontaneous germline mutation rates among drosophila, mouse, and human
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Comparative population genomics in animals uncovers the determinants of genetic diversity
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Parental influence on human germline de novo mutations in 1,548 trios from Iceland
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Reciprocal genomic evolution in the ant–fungus agricultural symbiosis
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Comparative genomics reveals convergent rates of evolution in ant–plant mutualisms
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Pairwise comparisons across species are problematic when analyzing functional genomic data
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Overlooked roles of DNA damage and maternal age in generating human germline mutations
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A study on spermatozoa viability over time in honey bee (Apis mellifera ligustica) queen spermathecae
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Relationship between Ovariole Number and Spermathecal Sperm Count in Ant Queens: a New Allometry
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PAML: a program package for phylogenetic analysis by maximum likelihood
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GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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InterProScan 5: genome-scale protein function classification
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
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BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
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The Genome and Methylome of a Subsocial Small Carpenter Bee,Ceratina calcarata
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Sociality and the Rate of Molecular Evolution
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
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A Generation Time Effect on the Rate of Molecular Evolution in Invertebrates
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RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
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Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals
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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
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Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
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Why do species vary in their rate of molecular evolution?
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Prudent sperm use by leaf-cutter ant queens
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Macroevolutionary assembly of ant/plant symbioses:Pseudomyrmexants and their ant-housing plants in the Neotropics
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Paternity in eusocial Hymenoptera
inferredcites →https://doi.org/10.1098/rstb.2011.0014openalex-snapshot
The genome as a life-history character: why rate of molecular evolution varies between mammal species
inferredcites →https://doi.org/10.1101/gr.6743907openalex-snapshot
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
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TESTING THE MUSEUM VERSUS CRADLE TROPICAL BIOLOGICAL DIVERSITY HYPOTHESIS: PHYLOGENY, DIVERSIFICATION, AND ANCESTRAL BIOGEOGRAPHIC RANGE EVOLUTION OF THE ANTS
inferredcites →https://doi.org/10.1111/evo.13117openalex-snapshot
Defensive traits exhibit an evolutionary trade‐off and drive diversification in ants
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Phylogeny, diversification patterns and historical biogeography of euglossine orchid bees (Hymenoptera: Apidae)
inferredcites →https://doi.org/10.1111/j.1365-3113.2004.00281.xopenalex-snapshot
The ant subfamily Pseudomyrmecinae (Hymenoptera: Formicidae): phylogeny and evolution of big‐eyed arboreal ants
inferredcites →https://doi.org/10.1126/science.1163197openalex-snapshot
Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
inferredcites →https://doi.org/10.1126/science.aaa4788openalex-snapshot
Genomic signatures of evolutionary transitions from solitary to group living
inferredcites →https://doi.org/10.1146/annurev.ento.50.071803.130416openalex-snapshot
THE EVOLUTION OF MALE TRAITS IN SOCIAL INSECTS
inferredcites →https://doi.org/10.11646/zootaxa.4227.4.3openalex-snapshot
A review of the Pseudomyrmex ferrugineus and Pseudomyrmex goeldii species groups: acacia-ants and relatives (Hymenoptera: Formicidae)
inferredcites →https://doi.org/10.1186/1471-2105-12-124openalex-snapshot
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1471-2148-13-126openalex-snapshot
Parasitic plants have increased rates of molecular evolution across all three genomes
inferredcites →https://doi.org/10.1186/1471-2164-15-86openalex-snapshot
Finding the missing honey bee genes: lessons learned from a genome upgrade
inferredcites →https://doi.org/10.1186/gb-2006-7-s1-s11openalex-snapshot
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
inferredcites →https://doi.org/10.1186/s13059-015-0623-3openalex-snapshot
The genomes of two key bumblebee species with primitive eusocial organization
inferredcites →https://doi.org/10.1371/journal.pcbi.1000392openalex-snapshot
Fast Statistical Alignment
inferredcites →https://doi.org/10.1515/9780691206899openalex-snapshot
Social Evolution in Ants
inferredcites →https://doi.org/10.1534/g3.117.043687openalex-snapshot
The Nuclear and Mitochondrial Genomes of the Facultatively Eusocial Orchid Bee Euglossa dilemma
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LIFE HISTORY AND THE MALE MUTATION BIAS
inferredcites →https://doi.org/10.1590/s0031-10492004000300001openalex-snapshot
A comparative study of the ovaries in some Brazilian bees (Hymenoptera; Apoidea)
inferredcites →https://doi.org/10.2307/3134openalex-snapshot
Evolution of Polygynous Obligate Acacia-Ants in Western Mexico
inferredcites →https://doi.org/10.2307/3545359openalex-snapshot
Nesting Space Limits Colony Size of the Plant-Ant Pseudomyrmex concolor
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R: A Language and Environment for Statistical Computing
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Reproductive conflict among workers of the ant species Pseudomyrmex gracilis (Hymenoptera: Formicidae)
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Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling
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