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Modeling the Electro-chemical Properties of Microbial Opsin ChrimsonR for Application to Optogenetics-based Vision Restoration

https://doi.org/10.1101/417899
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/anie.201410180openalex-snapshot
Early Formation of the Ion‐Conducting Pore in Channelrhodopsin‐2
inferredcites →https://doi.org/10.1002/cphc.200900980openalex-snapshot
Evolution of the Channelrhodopsin Photocycle Model
inferredcites →https://doi.org/10.1007/bf00961734openalex-snapshot
Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism
inferredcites →https://doi.org/10.1016/j.bbabio.2013.10.014openalex-snapshot
Channelrhodopsin unchained: Structure and mechanism of a light-gated cation channel
inferredcites →https://doi.org/10.1016/j.bpj.2009.10.052openalex-snapshot
Two Open States with Progressive Proton Selectivities in the Branched Channelrhodopsin-2 Photocycle
inferredcites →https://doi.org/10.1016/j.bpj.2013.05.042openalex-snapshot
Ion Selectivity and Competition in Channelrhodopsins
inferredcites →https://doi.org/10.1016/j.bpj.2017.02.001openalex-snapshot
Complex Photochemistry within the Green-Absorbing Channelrhodopsin ReaChR
inferredcites →https://doi.org/10.1016/j.exer.2008.11.022openalex-snapshot
Remodeling of cone photoreceptor cells after rod degeneration in rd mice
inferredcites →https://doi.org/10.1016/j.jmb.2007.10.072openalex-snapshot
Spectral Characteristics of the Photocycle of Channelrhodopsin-2 and Its Implication for Channel Function
inferredcites →https://doi.org/10.1016/j.jmb.2011.09.049openalex-snapshot
Projection Structure of Channelrhodopsin-2 at 6 Å Resolution by Electron Crystallography
inferredcites →https://doi.org/10.1016/j.jmb.2013.01.033openalex-snapshot
Towards an Understanding of Channelrhodopsin Function: Simulations Lead to Novel Insights of the Channel Mechanism
inferredcites →https://doi.org/10.1021/acs.biochem.5b00597openalex-snapshot
Light–Dark Adaptation of Channelrhodopsin Involves Photoconversion between the all-trans and 13-cis Retinal Isomers
inferredcites →https://doi.org/10.1021/bi901634popenalex-snapshot
Structural Guidance of the Photocycle of Channelrhodopsin-2 by an Interhelical Hydrogen Bond
inferredcites →https://doi.org/10.1021/ja8084274openalex-snapshot
Conformational Changes of Channelrhodopsin-2
inferredcites →https://doi.org/10.1038/nature10870openalex-snapshot
Crystal structure of the channelrhodopsin light-gated cation channel
inferredcites →https://doi.org/10.1038/nmeth.2836openalex-snapshot
Independent optical excitation of distinct neural populations
inferredcites →https://doi.org/10.1038/nn.2495openalex-snapshot
Ultrafast optogenetic control
inferredcites →https://doi.org/10.1038/nn.4094openalex-snapshot
Optogenetics and the future of neuroscience
inferredcites →https://doi.org/10.1073/pnas.1219502110openalex-snapshot
Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating
inferredcites →https://doi.org/10.1074/jbc.m112.446427openalex-snapshot
Light-dark Adaptation of Channelrhodopsin C128T Mutant
inferredcites →https://doi.org/10.1109/tbme.2011.2114883openalex-snapshot
Modeling Study of the Light Stimulation of a Neuron Cell With Channelrhodopsin-2 Mutants
inferredcites →https://doi.org/10.1111/j.1751-1097.2008.00460.xopenalex-snapshot
Photocycles of Channelrhodopsin‐2
inferredcites →https://doi.org/10.1126/scitranslmed.3005708openalex-snapshot
In Vivo–Directed Evolution of a New Adeno-Associated Virus for Therapeutic Outer Retinal Gene Delivery from the Vitreous
inferredcites →https://doi.org/10.1371/journal.pone.0119558openalex-snapshot
Kinetic Evaluation of Photosensitivity in Bi-Stable Variants of Chimeric Channelrhodopsins
inferredcites →https://doi.org/10.1371/journal.pone.0131080openalex-snapshot
Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps
inferredcites →https://doi.org/10.1529/biophysj.105.069716openalex-snapshot
Multiple Photocycles of Channelrhodopsin
inferredcites →https://doi.org/10.3389/fninf.2016.00008openalex-snapshot
PyRhO: A Multiscale Optogenetics Simulation Platform

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-026-68578-yopenalex-snapshot
Iso-orientation bias of layer 2/3 connections unifies spontaneous, visually and optogenetically driven V1 dynamics
inferred← citeshttps://doi.org/10.1038/s41598-021-88960-8openalex-snapshot
Assessment of optogenetically-driven strategies for prosthetic restoration of cortical vision in large-scale neural simulation of V1
inferred← citeshttps://doi.org/10.1038/s42003-020-01594-wopenalex-snapshot
Optogenetic therapy: high spatiotemporal resolution and pattern discrimination compatible with vision restoration in non-human primates
inferred← citeshttps://doi.org/10.1088/1741-2552/ac1175openalex-snapshot
Theoretical analysis of optogenetic spiking with ChRmine, bReaChES and CsChrimson-expressing neurons for retinal prostheses
inferred← citeshttps://doi.org/10.1101/2024.11.19.624284openalex-snapshot
Iso-orientation bias of layer 2/3 connections: the unifying mechanism of spontaneous, visually and optogenetically driven V1 dynamics
inferred← citeshttps://doi.org/10.1101/2025.08.29.673020openalex-snapshot
Efficient incorporation of dendrites into a large-scale cortical model reveals their surprising role in sharpening optogenetic responses
inferred← citeshttps://doi.org/10.1101/2025.11.03.684808openalex-snapshot
Beyond retinotopy: exploiting native visual representations in cortical neuroprostheses for vision loss remediation
inferred← citeshttps://doi.org/10.1101/610378openalex-snapshot
Cortical visual prosthesis: a detailed large-scale simulation study
inferred← citeshttps://doi.org/10.1109/tbcas.2019.2951298openalex-snapshot
Optogenetic Stimulation for Restoring Vision to Patients Suffering From Retinal Degenerative Diseases: Current Strategies and Future Directions
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