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Sexual selection rewires reproductive protein networks

https://doi.org/10.1101/422410
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Outgoing claims: the papers this work cites, builds on, or argues with.

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More powerful procedures for multiple significance testing
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Seminal Fluid Protein Allocation and Male Reproductive Success
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Sex peptide receptor is required for the release of stored sperm by mated Drosophila melanogaster females
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A Combined Transmembrane Topology and Signal Peptide Prediction Method
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From molecules to mating: Rapid evolution and biochemical studies of reproductive proteins
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QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics
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Evolution and dynamics of protein interactions and networks
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The seminal symphony: how to compose an ejaculate
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Basic Local Alignment Search Tool
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A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
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Virtual Polymorphism: Finding Divergent Peptide Matches in Mass Spectrometry Data
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Evolution under monogamy feminizes gene expression in Drosophila melanogaster
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Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity
inferredcites →https://doi.org/10.1038/ng1915openalex-snapshot
Genomic and functional evolution of the Drosophila melanogaster sperm proteome
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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Integration of biological networks and gene expression data using Cytoscape
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Mating system manipulation and the evolution of sex-biased gene expression in Drosophila
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Comparative structural modeling and inference of conserved protein classes in Drosophila seminal fluid
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Mating-responsive genes in reproductive tissues of female Drosophila melanogaster
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Acp36DE is required for uterine conformational changes in mated Drosophila females
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Protein-specific manipulation of ejaculate composition in response to female mating status in Drosophila melanogaster
inferredcites →https://doi.org/10.1073/pnas.131568198openalex-snapshot
Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1501339112openalex-snapshot
Sexual selection drives evolution and rapid turnover of male gene expression
inferredcites →https://doi.org/10.1073/pnas.1505797112openalex-snapshot
Integrated 3D view of postmating responses by the Drosophila melanogaster female reproductive tract, obtained by micro-computed tomography scanning
inferredcites →https://doi.org/10.1074/mcp.m800203-mcp200openalex-snapshot
Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics
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Frequent Multiple Insemination in a Natural Population of Drosophila pseudoobscura
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Experimental Removal and Elevation of Sexual Selection: Does Sexual Selection Generate Manipulative Males and Resistant Females?
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The evolution of polyandry
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ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
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CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data
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Impact of Extracellularity on the Evolutionary Rate of Mammalian Proteins
inferredcites →https://doi.org/10.1093/gbe/evu157openalex-snapshot
Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds
inferredcites →https://doi.org/10.1093/molbev/msi067openalex-snapshot
Comparative Genomics of Accessory Gland Protein Genes in Drosophila melanogaster and D. pseudoobscura
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msn237openalex-snapshot
Comparative Proteomics Reveals Evidence for Evolutionary Diversification of Rodent Seminal Fluid and Its Functional Significance in Sperm Competition
inferredcites →https://doi.org/10.1093/molbev/msp094openalex-snapshot
Proteomics and Comparative Genomic Investigations Reveal Heterogeneity in Evolutionary Rate of Male Reproductive Proteins in Mice (Mus domesticus)
inferredcites →https://doi.org/10.1093/molbev/msq007openalex-snapshot
Sperm Proteomics Reveals Intensified Selection on Mouse Sperm Membrane and Acrosome Genes
inferredcites →https://doi.org/10.1093/molbev/mss228openalex-snapshot
Evidence for Compensatory Evolution of Ribosomal Proteins in Response to Rapid Divergence of Mitochondrial rRNA
inferredcites →https://doi.org/10.1093/molbev/msu114openalex-snapshot
Molecular Characterization and Evolution of a Gene Family Encoding Both Female- and Male-Specific Reproductive Proteins in Drosophila
inferredcites →https://doi.org/10.1093/molbev/msw268openalex-snapshot
Secreted proteins defy the expression level–evolutionary rate anticorrelation
inferredcites →https://doi.org/10.1093/molbev/msx084openalex-snapshot
Comparative Sperm Proteomics in Mouse Species with Divergent Mating Systems
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkl315openalex-snapshot
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
inferredcites →https://doi.org/10.1093/nar/gkm256openalex-snapshot
Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server
inferredcites →https://doi.org/10.1093/nar/gku1003openalex-snapshot
STRING v10: protein–protein interaction networks, integrated over the tree of life
inferredcites →https://doi.org/10.1093/nar/gku1220openalex-snapshot
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
inferredcites →https://doi.org/10.1098/rspb.2001.1854openalex-snapshot
Efficiency of gamete usage in nature: sperm storage, fertilization and polyspermy
inferredcites →https://doi.org/10.1098/rspb.2013.2607openalex-snapshot
Mating systems and protein–protein interactions determine evolutionary rates of primate sperm proteins
inferredcites →https://doi.org/10.1098/rstb.2005.1793openalex-snapshot
Rapid evolution of reproductive proteins in abalone and Drosophila
inferredcites →https://doi.org/10.1101/gr.089391.108openalex-snapshot
Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01907.xopenalex-snapshot
Increased opportunity for sexual conflict promotes harmful males with elevated courtship frequencies
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00157.xopenalex-snapshot
EJACULATE DEPLETION PATTERNS EVOLVE IN RESPONSE TO EXPERIMENTAL MANIPULATION OF SEX RATIO INDROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00601.xopenalex-snapshot
EXPERIMENTAL MANIPULATION OF SEXUAL SELECTION PROMOTES GREATER MALE MATING CAPACITY BUT DOES NOT ALTER SPERM INVESTMENT
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00682.xopenalex-snapshot
A TEST AND REVIEW OF THE ROLE OF EFFECTIVE POPULATION SIZE ON EXPERIMENTAL SEXUAL SELECTION PATTERNS
inferredcites →https://doi.org/10.1128/mmbr.64.3.515-547.2000openalex-snapshot
Signal Peptide-Dependent Protein Transport in Bacillus subtilis : a Genome-Based Survey of the Secretome
inferredcites →https://doi.org/10.1146/annurev-ento-120709-144823openalex-snapshot
Insect Seminal Fluid Proteins: Identification and Function
inferredcites →https://doi.org/10.1214/aoms/1177730491openalex-snapshot
On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other
inferredcites →https://doi.org/10.12688/f1000research.4492.2openalex-snapshot
Cytoscape: the network visualization tool for GenomeSpace workflows
inferredcites →https://doi.org/10.1371/journal.pbio.0060178openalex-snapshot
Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating
inferredcites →https://doi.org/10.1371/journal.pgen.0010035openalex-snapshot
Pervasive Adaptive Evolution in Primate Seminal Proteins
inferredcites →https://doi.org/10.1371/journal.pgen.1004108openalex-snapshot
Evolutionary Rate Covariation Identifies New Members of a Protein Network Required for Drosophila melanogaster Female Post-Mating Responses
inferredcites →https://doi.org/10.1371/journal.pone.0030288openalex-snapshot
Accounting For Alignment Uncertainty in Phylogenomics
inferredcites →https://doi.org/10.1515/9781400850600openalex-snapshot
Sexual Conflict
inferredcites →https://doi.org/10.1530/rep.1.00357openalex-snapshot
Evolution of reproductive proteins from animals and plants
inferredcites →https://doi.org/10.1534/genetics.105.043844openalex-snapshot
Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes
inferredcites →https://doi.org/10.1534/genetics.110.119735openalex-snapshot
Sex Peptide Is Required for the Efficient Release of Stored Sperm in Mated Drosophila Females
inferredcites →https://doi.org/10.1534/genetics.115.176669openalex-snapshot
Retention of Ejaculate by Drosophila melanogaster Females Requires the Male-Derived Mating Plug Protein PEBme
inferredcites →https://doi.org/10.1586/epr.12.52openalex-snapshot
Exoproteomics: exploring the world around biological systems
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Protein-Protein Interaction (PPI) Network: Recent Advances in Drug Discovery
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The life cycle of Drosophila orphan genes
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