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chroGPS2: differential analysis of epigenome maps in R

https://doi.org/10.1101/425892
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2010.09.009openalex-snapshot
Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
inferredcites →https://doi.org/10.1038/459927aopenalex-snapshot
Unlocking the secrets of the genome
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nbt.3157openalex-snapshot
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
inferredcites →https://doi.org/10.1038/nbt1010-1045openalex-snapshot
The NIH Roadmap Epigenomics Mapping Consortium
inferredcites →https://doi.org/10.1038/nmeth.3252openalex-snapshot
Orchestrating high-throughput genomic analysis with Bioconductor
inferredcites →https://doi.org/10.1038/nmeth.3409openalex-snapshot
Visualizing epigenomic data
inferredcites →https://doi.org/10.1093/bioinformatics/btv562openalex-snapshot
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests
inferredcites →https://doi.org/10.1093/nar/gkt1186openalex-snapshot
chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome
inferredcites →https://doi.org/10.1101/036764openalex-snapshot
Structural features of the fly chromatin colors revealed by automatic three-dimensional modeling
inferredcites →https://doi.org/10.1371/journal.pone.0089680openalex-snapshot
A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
inferredcites →https://doi.org/10.1371/journal.pone.0101238openalex-snapshot
Much beyond Mantel: Bringing Procrustes Association Metric to the Plant and Soil Ecologist’s Toolbox
inferredcites →https://doi.org/10.18637/jss.v040.i01openalex-snapshot
The Split-Apply-Combine Strategy for Data Analysis
inferredcites →https://doi.org/10.18637/jss.v040.i05openalex-snapshot
DPpackage: Bayesian Semi- and Nonparametric Modeling inR

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/nar/gkaa122openalex-snapshot
The embryonic linker histone dBigH1 alters the functional state of active chromatin
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