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Single-cell in situ transcriptomic map of astrocyte cortical layer diversity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Cell‐type‐specific consequences of reelin deficiency in the mouse neocortex, hippocampus, and amygdala
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A Novel Chordin-like Protein Inhibitor for Bone Morphogenetic Proteins Expressed Preferentially in Mesenchymal Cell Lineages
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Gene Characterization of Sciellin (SCEL) and Protein Localization in Vertebrate Epithelia Displaying Barrier Properties
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Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types
inferredcites →https://doi.org/10.1016/j.cell.2018.04.029openalex-snapshot
Structural Basis of Smoothened Activation in Hedgehog Signaling
inferredcites →https://doi.org/10.1016/j.celrep.2017.12.039openalex-snapshot
The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain
inferredcites →https://doi.org/10.1016/j.jchemneu.2015.12.004openalex-snapshot
BCL11B/CTIP2 is highly expressed in GABAergic interneurons of the mouse somatosensory cortex
inferredcites →https://doi.org/10.1016/j.jmoldx.2011.08.002openalex-snapshot
RNAscope
inferredcites →https://doi.org/10.1016/j.neuron.2007.12.012openalex-snapshot
Satb2 Regulates Callosal Projection Neuron Identity in the Developing Cerebral Cortex
inferredcites →https://doi.org/10.1016/j.neuron.2013.10.034openalex-snapshot
Evolving Concepts of Gliogenesis: A Look Way Back and Ahead to the Next 25 Years
inferredcites →https://doi.org/10.1016/j.neuron.2016.10.001openalex-snapshot
In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
inferredcites →https://doi.org/10.1016/j.neuron.2017.06.029openalex-snapshot
Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence
inferredcites →https://doi.org/10.1016/j.neuron.2018.03.010openalex-snapshot
Kir4.1-Dependent Astrocyte-Fast Motor Neuron Interactions Are Required for Peak Strength
inferredcites →https://doi.org/10.1016/s0962-8924(03)00147-8openalex-snapshot
Id proteins in development, cell cycle and cancer
inferredcites →https://doi.org/10.1038/nature02033openalex-snapshot
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
inferredcites →https://doi.org/10.1038/nature10959openalex-snapshot
Local generation of glia is a major astrocyte source in postnatal cortex
inferredcites →https://doi.org/10.1038/nature13161openalex-snapshot
Astrocyte-encoded positional cues maintain sensorimotor circuit integrity
inferredcites →https://doi.org/10.1038/nature25752openalex-snapshot
Astroglial Kir4.1 in the lateral habenula drives neuronal bursts in depression
inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot
Integrating single-cell transcriptomic data across different conditions, technologies, and species
inferredcites →https://doi.org/10.1038/nmeth.2657openalex-snapshot
Image-based transcriptomics in thousands of single human cells at single-molecule resolution
inferredcites →https://doi.org/10.1038/nn.4216openalex-snapshot
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
inferredcites →https://doi.org/10.1038/nn.4493openalex-snapshot
Identification of diverse astrocyte populations and their malignant analogs
inferredcites →https://doi.org/10.1038/nrn2151openalex-snapshot
Neuronal subtype specification in the cerebral cortex
inferredcites →https://doi.org/10.1038/s41467-018-03940-3openalex-snapshot
Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers
inferredcites →https://doi.org/10.1073/pnas.1504144112openalex-snapshot
Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex
inferredcites →https://doi.org/10.1073/pnas.1617699113openalex-snapshot
High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/cercor/bhu156openalex-snapshot
Satb2 Regulates the Differentiation of Both Callosal and Subcerebral Projection Neurons in the Developing Cerebral Cortex
inferredcites →https://doi.org/10.1126/science.aal3589openalex-snapshot
Astrocyte-derived interleukin-33 promotes microglial synapse engulfment and neural circuit development
inferredcites →https://doi.org/10.1126/science.aan6827openalex-snapshot
The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing
inferredcites →https://doi.org/10.1126/science.aat5691openalex-snapshot
Three-dimensional intact-tissue sequencing of single-cell transcriptional states
inferredcites →https://doi.org/10.1177/43.4.7897179openalex-snapshot
A novel in situ hybridization signal amplification method based on the deposition of biotinylated tyramine.
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.00654openalex-snapshot
Reelin signaling directly affects radial glia morphology and biochemical maturation
inferredcites →https://doi.org/10.1242/dev.069963openalex-snapshot
Transcriptional co-regulation of neuronal migration and laminar identity in the neocortex
inferredcites →https://doi.org/10.1242/jcs.181842openalex-snapshot
Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy
inferredcites →https://doi.org/10.1523/jneurosci.22-15-06309.2002openalex-snapshot
Cortical Excitatory Neurons and Glia, But Not GABAergic Neurons, Are Produced in the Emx1-Expressing Lineage
inferredcites →https://doi.org/10.1523/jneurosci.4037-13.2014openalex-snapshot
Phenotypic Heterogeneity and Plasticity of Isocortical and Hippocampal Astrocytes in the Human Brain
inferredcites →https://doi.org/10.1523/jneurosci.4178-07.2008openalex-snapshot
A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/glia.23771openalex-snapshot
An update on human astrocytes and their role in development and disease
inferred← citeshttps://doi.org/10.1002/glia.24578openalex-snapshot
The laminar position, morphology, and gene expression profiles of cortical astrocytes are influenced by time of birth from ventricular/subventricular progenitors
inferred← citeshttps://doi.org/10.1016/bs.ai.2026.06.004openalex-snapshot
Microglia in Alzheimer’s disease: Insights into disease progression and therapy
inferred← citeshttps://doi.org/10.1016/j.brainres.2023.148499openalex-snapshot
Neonatal estrogen induces male-like expression of astroglial markers of maturation and plasticity in the neocortex of female mice
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109362openalex-snapshot
Nutritional regulation of oligodendrocyte differentiation regulates perineuronal net remodeling in the median eminence
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.110310openalex-snapshot
Sex differences in developmental patterns of neocortical astroglia: A mouse translatome database
inferred← citeshttps://doi.org/10.1016/j.devcel.2020.11.010openalex-snapshot
Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease
inferred← citeshttps://doi.org/10.1016/j.tins.2020.01.003openalex-snapshot
Astrocytes and Microglia: In Sickness and in Health
inferred← citeshttps://doi.org/10.1038/d41586-019-02477-9openalex-snapshot
Starfish enterprise: finding RNA patterns in single cells
inferred← citeshttps://doi.org/10.1038/s41467-022-33140-zopenalex-snapshot
Transcriptomic architecture of nuclei in the marmoset CNS
inferred← citeshttps://doi.org/10.1038/s41586-019-1404-zopenalex-snapshot
Neuronal vulnerability and multilineage diversity in multiple sclerosis
inferred← citeshttps://doi.org/10.1038/s41598-019-48787-wopenalex-snapshot
Single-Cell Quantification of mRNA Expression in The Human Brain
inferred← citeshttps://doi.org/10.1038/s43018-020-0085-8openalex-snapshot
Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
inferred← citeshttps://doi.org/10.22215/etd/2023-15750openalex-snapshot
Astroglial Cells as Gonadal Hormone Targets: Mediators of Sex Differences in Development and Adulthood
inferred← citeshttps://doi.org/10.7554/elife.45545openalex-snapshot
Sonic hedgehog signaling in astrocytes mediates cell type-specific synaptic organization
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