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Comparative whole-genome analysis reveals genetic adaptation of the invasive pinewood nematode

https://doi.org/10.1101/439612
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4020-8455-3openalex-snapshot
Pine Wilt Disease: A Worldwide Threat to Forest Ecosystems
inferredcites →https://doi.org/10.1007/978-1-62703-414-2_24openalex-snapshot
Analysis of RNA-Seq Data with TopHat and Cufflinks for Genome-Wide Expression Analysis of Jasmonate-Treated Plants and Plant Cultures
inferredcites →https://doi.org/10.1007/bf01086307openalex-snapshot
Pine wilt toxin, the metabolite of a bacterium associated with a nematode
inferredcites →https://doi.org/10.1007/s10530-008-9225-2openalex-snapshot
Competitive displacement of the native species Bursaphelenchus mucronatus by an alien species Bursaphelenchus xylophilus (Nematoda: Aphelenchida: Aphelenchoididae): a case of successful invasion
inferredcites →https://doi.org/10.1007/s10530-014-0788-9openalex-snapshot
Worldwide invasion routes of the pinewood nematode: What can we infer from population genetics analyses?
inferredcites →https://doi.org/10.1007/s13258-009-0842-7openalex-snapshot
Microsatellite variation in the pinewood nematode, Bursaphelenchus xylophilus (Steiner and Buhrer) Nickle in South Korea
inferredcites →https://doi.org/10.1016/j.tree.2007.09.008openalex-snapshot
Adaptation from standing genetic variation
inferredcites →https://doi.org/10.1016/s0169-5347(02)02554-5openalex-snapshot
Evolutionary genetics of invasive species
inferredcites →https://doi.org/10.1038/nature08696openalex-snapshot
The sequence and de novo assembly of the giant panda genome
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/sj.hdy.6801082openalex-snapshot
Genetic variation in the invasive process of Bursaphelenchus xylophilus (Aphelenchida: Aphelenchoididae) and its possible spread routes in China
inferredcites →https://doi.org/10.1038/srep01869openalex-snapshot
Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation
inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btq665openalex-snapshot
Mugsy: fast multiple alignment of closely related whole genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btr342openalex-snapshot
genBlastG: using BLAST searches to build homologous gene models
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msv035openalex-snapshot
Gene-Wide Identification of Episodic Selection
inferredcites →https://doi.org/10.1094/phyto-97-3-0304openalex-snapshot
Genetic Structure of Populations of the Pinewood Nematode Bursaphelenchus xylophilus, the Pathogen of Pine Wilt Disease, Between and Within Pine Forests
inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot
Circos: An information aesthetic for comparative genomics
inferredcites →https://doi.org/10.1111/j.1439-0329.2012.00793.xopenalex-snapshot
First isolation of pine wood nematode from P inus tabuliformis forests in C hina
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01188.xopenalex-snapshot
History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection
inferredcites →https://doi.org/10.1111/mpp.12057openalex-snapshot
Top 10 plant‐parasitic nematodes in molecular plant pathology
inferredcites →https://doi.org/10.1139/x83-143openalex-snapshot
The pine-wood nematode, Bursaphelenchusxylophilus, in Minnesota and Wisconsin: insect associates and transmission studies
inferredcites →https://doi.org/10.1139/x87-032openalex-snapshot
Incidence of pinewood nematode dauerlarvae and phoretic mites associated with long-horned beetles in central Louisiana
inferredcites →https://doi.org/10.1139/x89-232openalex-snapshot
Distribution of the pinewood nematode in China and susceptibility of some Chinese and exotic pines to the nematode
inferredcites →https://doi.org/10.1146/annurev.ecolsys.32.081501.114037openalex-snapshot
The Population Biology of Invasive Species
inferredcites →https://doi.org/10.1146/annurev.en.29.010184.000555openalex-snapshot
The Japanese Pine Sawyer Beetle as the Vector of Pine Wilt Disease
inferredcites →https://doi.org/10.1146/annurev.ento.29.1.115openalex-snapshot
The Japanese Pine Sawyer Beetle as the Vector of Pine Wilt Disease
inferredcites →https://doi.org/10.1163/138855411x578888openalex-snapshot
Incidence of the pinewood nematode Bursaphelenchus xylophlius Steiner & Buhrer, 1934 (Nickle, 1970) in Spain
inferredcites →https://doi.org/10.1163/156854101317020213openalex-snapshot
Interaction of intrinsic and extrinsic chemical cues in the behaviour of Bursaphelenchus xylophilus (Aphelenchida: Aphelenchoididae) in relation to its beetle vectors
inferredcites →https://doi.org/10.1163/156854103773040817openalex-snapshot
Distribution and pathogenicity of bacteria species carried by Bursaphelenchus xylophilus in China
inferredcites →https://doi.org/10.1163/156854112x632673openalex-snapshot
The pine wood nematode, Bursaphelenchus xylophilus, in Portugal: possible introductions and spread routes of a serious biological invasion revealed by molecular methods
inferredcites →https://doi.org/10.1163/156854199508757openalex-snapshot
First report of Bursaphelenchus xylophilus in Portugal and in Europe
inferredcites →https://doi.org/10.1186/1471-2148-10-130openalex-snapshot
Convergent evolution of RFX transcription factors and ciliary genes predated the origin of metazoans
inferredcites →https://doi.org/10.1186/1471-2148-13-12openalex-snapshot
Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r7openalex-snapshot
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
inferredcites →https://doi.org/10.1186/gb-2010-11-4-r41openalex-snapshot
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
inferredcites →https://doi.org/10.1186/s12864-015-2085-0openalex-snapshot
Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pone.0056288openalex-snapshot
New Insights into the Phylogeny and Worldwide Dispersion of Two Closely Related Nematode Species, Bursaphelenchus xylophilus and Bursaphelenchus mucronatus
inferredcites →https://doi.org/10.1371/journal.pone.0059165openalex-snapshot
First Insights into the Genetic Diversity of the Pinewood Nematode in Its Native Area Using New Polymorphic Microsatellite Loci
inferredcites →https://doi.org/10.1371/journal.pone.0083542openalex-snapshot
Assessment of the Geographic Origins of Pinewood Nematode Isolates via Single Nucleotide Polymorphism in Effector Genes
inferredcites →https://doi.org/10.1371/journal.ppat.1002219openalex-snapshot
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
inferredcites →https://doi.org/10.1890/12-2229.1openalex-snapshot
A native fungal symbiont facilitates the prevalence and development of an invasive pathogen–native vector symbiosis
inferredcites →https://doi.org/10.2478/s11687-012-0020-3openalex-snapshot
The pinewood nematode, Bursaphelenchus xylophilus, in Madeira Island
inferredcites →https://doi.org/10.2737/se-gtr-55openalex-snapshot
An Overview of the Pine Wood Nematode Ban in North America
inferredcites →https://doi.org/10.3186/jjphytopath.59.666openalex-snapshot
Chemical Defense Responses of Wilt-Resistant Pine Species, Pinus strobus and P. taeda, against Bursaphelenchus xylophilus Infection.
inferredcites →https://doi.org/10.3389/fendo.2012.00157openalex-snapshot
Feeding and the Rhodopsin Family G-Protein Coupled Receptors in Nematodes and Arthropods

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/mec.15378openalex-snapshot
Gene family expansion of pinewood nematode to detoxify its host defence chemicals
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