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Transcriptional dynamics following freezing stress reveal selection for mechanisms of freeze tolerance at the poleward range margin in the cold water intertidal barnacle Semibalanus balanoides

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-010x(20000301)286:4<367::aid-jez4>3.0.co;2-fopenalex-snapshot

Triggering of cryoprotectant synthesis in the woolly bear caterpillar (Pyrrharctia isabella Lepidoptera: Arctiidae)

inferredcites →https://doi.org/10.1002/cphy.c130007openalex-snapshot

Molecular Biology of Freezing Tolerance

inferredcites →https://doi.org/10.1002/lom3.10103openalex-snapshot

A simplified biomimetic temperature logger for recording intertidal barnacle body temperatures

inferredcites →https://doi.org/10.1007/bf00346803openalex-snapshot

Seasonal changes in the free glycerol level in the body parts of the adult barnacle Balanus balanoides

inferredcites →https://doi.org/10.1007/bf00348814openalex-snapshot

Acquisition and loss of cold-tolerance in adult barnacles (Balanus balanoides) kept under laboratory conditions

inferredcites →https://doi.org/10.1007/bf00693004openalex-snapshot

Cold-induced mitochondrial degradation and cryoprotectant synthesis in freeze-tolerant arctic caterpillars

inferredcites →https://doi.org/10.1007/bf01618612openalex-snapshot

Changes in temperature tolerance ofBalanus balanoides during its life-cycle

inferredcites →https://doi.org/10.1007/s00300-006-0152-3openalex-snapshot

Ecophysiological strategies of Antarctic intertidal invertebrates faced with freezing stress

inferredcites →https://doi.org/10.1007/s00300-009-0732-0openalex-snapshot

Acquisition of freeze protection in a sea-ice crustacean through horizontal gene transfer?

inferredcites →https://doi.org/10.1007/s00360-007-0183-2openalex-snapshot

Is cold the new hot? Elevated ubiquitin-conjugated protein levels in tissues of Antarctic fish as evidence for cold-denaturation of proteins in vivo

inferredcites →https://doi.org/10.1016/0005-2736(88)90542-1openalex-snapshot

Identification of strombine and taurine as cryoprotectants in the intertidal bivalve Mytilus edulis

inferredcites →https://doi.org/10.1016/0300-9629(77)90206-7openalex-snapshot

Freezing tolerance in Balanus balanoides

inferredcites →https://doi.org/10.1016/j.cbpa.2009.10.026openalex-snapshot

Intracellular ice formation in insects: Unresolved after 50years?

inferredcites →https://doi.org/10.1016/j.jinsphys.2003.12.003openalex-snapshot

Antifreeze proteins in Alaskan insects and spiders

inferredcites →https://doi.org/10.1016/j.jinsphys.2011.02.006openalex-snapshot

Function and immuno-localization of aquaporins in the Antarctic midge Belgica antarctica

inferredcites →https://doi.org/10.1016/j.jinsphys.2011.04.022openalex-snapshot

Transmembrane ion distribution during recovery from freezing in the woolly bear caterpillar Pyrrharctia isabella (Lepidoptera: Arctiidae)

inferredcites →https://doi.org/10.1016/j.jtherbio.2015.11.003openalex-snapshot

An invitation to measure insect cold tolerance: Methods, approaches, and workflow

inferredcites →https://doi.org/10.1016/j.tibs.2014.09.005openalex-snapshot

Ice-binding proteins: a remarkable diversity of structures for stopping and starting ice growth

inferredcites →https://doi.org/10.1016/j.tree.2015.09.011openalex-snapshot

Where and When do Species Interactions Set Range Limits?

inferredcites →https://doi.org/10.1016/s0021-9258(18)41967-9openalex-snapshot

Structure of an antifreeze polypeptide from the sea raven. Disulfide bonds and similarity to lectin-binding proteins.

inferredcites →https://doi.org/10.1016/s0300-9629(96)00270-8openalex-snapshot

Organic Solutes in Freezing Tolerance

inferredcites →https://doi.org/10.1016/s1146-609x(03)00045-6openalex-snapshot

Cold hardiness in molluscs

inferredcites →https://doi.org/10.1017/cbo9780511675997.002openalex-snapshot

A primer on insect cold-tolerance

inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot

The hitch-hiking effect of a favourable gene

inferredcites →https://doi.org/10.1017/s1464793102006024openalex-snapshot

Climatic variability and the evolution of insect freeze tolerance

inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

inferredcites →https://doi.org/10.1038/nclimate1539openalex-snapshot

Thermal tolerance and the global redistribution of animals

inferredcites →https://doi.org/10.1038/ncomms5611openalex-snapshot

Compact genome of the Antarctic midge is likely an adaptation to an extreme environment

inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot

Fast and sensitive protein alignment using DIAMOND

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/nsmb1109-1123openalex-snapshot

Tracking rates of transcription and splicing in vivo

inferredcites →https://doi.org/10.1039/c0cp00945hopenalex-snapshot

On the molecular origin of cold denaturation of globular proteins

inferredcites →https://doi.org/10.1042/bst20160243openalex-snapshot

When mRNA translation meets decay

inferredcites →https://doi.org/10.1073/pnas.0606840103openalex-snapshot

Continuous up-regulation of heat shock proteins in larvae, but not adults, of a polar insect

inferredcites →https://doi.org/10.1086/676138openalex-snapshot

Latitudinal Variation of Freeze Tolerance in Intertidal Marine Snails of the GenusMelampus(Gastropoda: Ellobiidae)

inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot

CD-HIT: accelerated for clustering the next-generation sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btt285openalex-snapshot

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

inferredcites →https://doi.org/10.1093/icb/ics099openalex-snapshot

Genetic Variation in the Acorn Barnacle from Allozymes to Population Genomics

inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot

KAAS: an automatic genome annotation and pathway reconstruction server

inferredcites →https://doi.org/10.1093/nar/gkn176openalex-snapshot

High-throughput functional annotation and data mining with the Blast2GO suite

inferredcites →https://doi.org/10.1093/nar/gkw343openalex-snapshot

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

inferredcites →https://doi.org/10.1093/pcp/pcs164openalex-snapshot

Changes in mRNA Stability Associated with Cold Stress in Arabidopsis Cells

inferredcites →https://doi.org/10.1098/rspb.2000.1012openalex-snapshot

Environmental heterogeneity and balancing selection in the acorn barnacleSemibalanus balanoides

inferredcites →https://doi.org/10.1098/rstb.1990.0037openalex-snapshot

Cold adaptation in marine organisms

inferredcites →https://doi.org/10.1111/1365-2435.12328openalex-snapshot

The relative importance of number, duration and intensity of cold stress events in determining survival and energetics of an overwintering insect

inferredcites →https://doi.org/10.1111/brv.12425openalex-snapshot

Mechanisms underlying insect freeze tolerance

inferredcites →https://doi.org/10.1111/j.1365-2583.2007.00743.xopenalex-snapshot

Transcription of antifreeze protein genes in Choristoneura fumiferana

inferredcites →https://doi.org/10.1111/j.1365-3040.2008.01840.xopenalex-snapshot

Rhododendron catawbiense plasma membrane intrinsic proteins are aquaporins, and their over‐expression compromises constitutive freezing tolerance and cold acclimation ability of transgenic Arabidopsis plants

inferredcites →https://doi.org/10.1111/j.1570-7458.1995.tb01911.xopenalex-snapshot

Non‐freeze survival of spruce budworm larvae, Choristoneura fumiferana, at sub‐zero temperatures during diapause

inferredcites →https://doi.org/10.1146/annurev-ento-011613-162107openalex-snapshot

Insect Heat Shock Proteins During Stress and Diapause

inferredcites →https://doi.org/10.1146/annurev.ecolsys.110308.120317openalex-snapshot

Evolution and Ecology of Species Range Limits

inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.365openalex-snapshot

NATURAL FREEZING SURVIVAL IN ANIMALS

inferredcites →https://doi.org/10.1146/annurev.ph.45.030183.001445openalex-snapshot

Freezing Resistance in Intertidal Invertebrates

inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot

ANGSD: Analysis of Next Generation Sequencing Data

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s13059-016-0881-8openalex-snapshot

A survey of best practices for RNA-seq data analysis

inferredcites →https://doi.org/10.1242/jeb.016758openalex-snapshot

Aquaporins play a role in desiccation and freeze tolerance in larvae of the goldenrod gall fly, Eurosta solidaginis

inferredcites →https://doi.org/10.1242/jeb.051276openalex-snapshot

The protective role of aquaporins in the freeze-tolerant insect Eurosta solidaginis: functional characterization and tissue abundance of EsAQP1

inferredcites →https://doi.org/10.1242/jeb.051912openalex-snapshot

Survival and energetic costs of repeated cold exposure in the Antarctic midge, Belgica antarctica : a comparison between frozen and supercooled larvae

inferredcites →https://doi.org/10.1242/jeb.054569openalex-snapshot

The sub-lethal effects of repeated freezing in the woolly bear caterpillar Pyrrharctia isabella

inferredcites →https://doi.org/10.1242/jeb.060624openalex-snapshot

Survival and energetic costs of repeated cold exposure in the Antarctic midge, Belgica antarctica: a comparison between frozen and supercooled larvae

inferredcites →https://doi.org/10.1242/jeb.089490openalex-snapshot

Surviving in a frozen desert: environmental stress physiology of terrestrial Antarctic arthropods

inferredcites →https://doi.org/10.1242/jeb.142158openalex-snapshot

Arginine and proline applied as food additives stimulate high freeze tolerance in larvae of Drosophila melanogaster

inferredcites →https://doi.org/10.1371/journal.pcbi.1004957openalex-snapshot

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0002616openalex-snapshot

Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes

inferredcites →https://doi.org/10.1371/journal.pone.0015925openalex-snapshot

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

inferredcites →https://doi.org/10.1371/journal.pone.0181192openalex-snapshot

Analysis of aquaporins from the euryhaline barnacle Balanus improvisus reveals differential expression in response to changes in salinity

inferredcites →https://doi.org/10.21775/cimb.006.125openalex-snapshot

Recent Developments in Bacterial Cold-Shock Response

inferredcites →https://doi.org/10.2307/1541373openalex-snapshot

GEOGRAPHIC LIMITS AND LOCAL ZONATION: THE BARNACLESSEMIBALANUS (BALANUS)ANDCHTHAMALUSIN NEW ENGLAND

inferredcites →https://doi.org/10.3354/cr005061openalex-snapshot

Cryobiology of the freeze-tolerant gall fly Eurosta solidaginis: overwintering energetics and heat shock proteins

inferredcites →https://doi.org/10.3390/md15020027openalex-snapshot

Marine Antifreeze Proteins: Structure, Function, and Application to Cryopreservation as a Potential Cryoprotectant

inferredcites →https://doi.org/10.4319/lo.2005.50.5.1520openalex-snapshot

Barnacle larvae in ice: Survival, reproduction, and time to postsettlement metamorphosis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s40610-019-00121-zopenalex-snapshot

Applications and Future Directions for Population Transcriptomics in Marine Invertebrates

inferred← citeshttps://doi.org/10.1016/j.tree.2019.09.008openalex-snapshot

Conservation Genomics in a Changing Arctic

inferred← citeshttps://doi.org/10.1093/conphys/coz098openalex-snapshot

Local cold adaption increases the thermal window of temperate mussels in the Arctic

inferred← citeshttps://doi.org/10.1101/2021.08.30.458284openalex-snapshot

Molecular evidence of intertidal habitats selecting for repeated ice-binding protein evolution in invertebrates

inferred← citeshttps://doi.org/10.1242/jeb.243409openalex-snapshot

Molecular evidence of intertidal habitats selecting for repeated ice-binding protein evolution in invertebrates

inferred← citeshttps://doi.org/10.1242/jeb.247043openalex-snapshot

Ice in the intertidal: patterns and processes of freeze tolerance in intertidal invertebrates

inferred← citeshttps://doi.org/10.3390/ani13040724openalex-snapshot

Variations of Supercooling Capacity in Intertidal Gastropods

inferred← citeshttps://doi.org/10.7554/elife.81080openalex-snapshot

Ocean acidification increases susceptibility to sub-zero air temperatures in ecosystem engineers and limits poleward range shifts

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