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Autoencoder and Optimal Transport to Infer Single-Cell Trajectories of Biological Processes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/pmic.201600267openalex-snapshot
Single cell proteomics in biomedicine: High‐dimensional data acquisition, visualization, and analysis
inferredcites →https://doi.org/10.1007/s10958-006-0049-2openalex-snapshot
On the Translocation of Masses
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.semcdb.2009.10.010openalex-snapshot
Cancer associated fibroblasts in cancer pathogenesis
inferredcites →https://doi.org/10.1016/j.trecan.2018.02.009openalex-snapshot
Nuclear Mechanopathology and Cancer Diagnosis
inferredcites →https://doi.org/10.1038/nature12644openalex-snapshot
A high-resolution map of the three-dimensional chromatin interactome in human cells
inferredcites →https://doi.org/10.1038/nrc.2016.73openalex-snapshot
The biology and function of fibroblasts in cancer
inferredcites →https://doi.org/10.1038/nrg2041openalex-snapshot
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
inferredcites →https://doi.org/10.1038/nrg3980openalex-snapshot
Single-cell epigenomics: techniques and emerging applications
inferredcites →https://doi.org/10.1038/nrm.2017.101openalex-snapshot
Regulation of genome organization and gene expression by nuclear mechanotransduction
inferredcites →https://doi.org/10.1038/s41556-018-0038-yopenalex-snapshot
Emerging views of the nucleus as a cellular mechanosensor
inferredcites →https://doi.org/10.1073/pnas.1513189113openalex-snapshot
Nuclear deformability and telomere dynamics are regulated by cell geometric constraints
inferredcites →https://doi.org/10.1073/pnas.1708028115openalex-snapshot
Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription
inferredcites →https://doi.org/10.1083/jcb.201610026openalex-snapshot
Machine learning and computer vision approaches for phenotypic profiling
inferredcites →https://doi.org/10.1083/jcb.201610042openalex-snapshot
Mechanosensing by the nucleus: From pathways to scaling relationships
inferredcites →https://doi.org/10.1101/191056openalex-snapshot
Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming
inferredcites →https://doi.org/10.1126/science.1127647openalex-snapshot
Reducing the Dimensionality of Data with Neural Networks
inferredcites →https://doi.org/10.1126/science.aad6933openalex-snapshot
Nongenetic functions of the genome
inferredcites →https://doi.org/10.1146/annurev-bioeng-071516-044442openalex-snapshot
Deep Learning in Medical Image Analysis
inferredcites →https://doi.org/10.1242/jcs.123604openalex-snapshot
Machine learning in cell biology – teaching computers to recognize phenotypes
inferredcites →https://doi.org/10.15252/msb.20178046openalex-snapshot
Using single‐cell genomics to understand developmental processes and cell fate decisions
inferredcites →https://doi.org/10.1561/2200000006openalex-snapshot
Learning Deep Architectures for AI
inferredcites →https://doi.org/10.1561/9781601982957openalex-snapshot
Learning Deep Architectures for AI
inferredcites →https://doi.org/10.48550/arxiv.1201.0490openalex-snapshot
Scikit-learn: Machine Learning in Python
inferredcites →https://doi.org/10.48550/arxiv.1609.08976openalex-snapshot
Variational Autoencoder for Deep Learning of Images, Labels and Captions
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41467-021-21056-zopenalex-snapshot
Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing
inferred← citeshttps://doi.org/10.1089/cmb.2021.0446openalex-snapshot
SCOT: Single-Cell Multi-Omics Alignment with Optimal Transport
inferred← citeshttps://doi.org/10.1109/jproc.2022.3166132openalex-snapshot
Machine Learning Approaches to Single-Cell Data Integration and Translation
inferred← citeshttps://doi.org/10.1214/20-aos1997openalex-snapshot
Minimax estimation of smooth optimal transport maps
inferred← citeshttps://doi.org/10.3150/21-bej1433openalex-snapshot
Estimation of Wasserstein distances in the Spiked Transport Model
inferred← citeshttps://doi.org/10.48550/arxiv.1910.04483openalex-snapshot
Tree-Wasserstein Barycenter for Large-Scale Multilevel Clustering and Scalable Bayes
inferred← citeshttps://doi.org/10.48550/arxiv.2007.12098openalex-snapshot
Optimal Transport using GANs for Lineage Tracing
inferred← citeshttps://doi.org/10.48550/arxiv.2008.11673openalex-snapshot
Orientation-Disentangled Unsupervised Representation Learning for Computational Pathology
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