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Convergent recruitment of life cycle regulators to direct sporophyte development in two eukaryotic supergroups

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0614s51openalex-snapshot

Using RAxML to Infer Phylogenies

inferredcites →https://doi.org/10.1007/978-94-017-9642-2openalex-snapshot

Evolutionary Transitions to Multicellular Life

inferredcites →https://doi.org/10.1007/978-94-017-9642-2_8openalex-snapshot

Emergence of Ectocarpus as a Model System to Study the Evolution of Complex Multicellularity in the Brown Algae

inferredcites →https://doi.org/10.1007/bf00290449openalex-snapshot

The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera

inferredcites →https://doi.org/10.1007/s00299-007-0409-5openalex-snapshot

Revelation of ancestral roles of KNOX genes by a functional analysis of Physcomitrella homologues

inferredcites →https://doi.org/10.1016/0092-8674(95)90372-0openalex-snapshot

Multiallelic recognition: Nonself-dependent dimerization of the bE and bW homeodomain proteins in ustilago maydis

inferredcites →https://doi.org/10.1016/0097-8485(94)85023-2openalex-snapshot

Non-globular domains in protein sequences: Automated segmentation using complexity measures

inferredcites →https://doi.org/10.1016/j.cell.2008.04.028openalex-snapshot

Early Sexual Origins of Homeoprotein Heterodimerization and Evolution of the Plant KNOX/BELL Family

inferredcites →https://doi.org/10.1016/j.cub.2014.07.042openalex-snapshot

A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

inferredcites →https://doi.org/10.1016/j.pbi.2013.09.004openalex-snapshot

Evolution and regulation of complex life cycles: a brown algal perspective

inferredcites →https://doi.org/10.1038/nature09016openalex-snapshot

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

inferredcites →https://doi.org/10.1038/ncomms5471openalex-snapshot

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

inferredcites →https://doi.org/10.1038/ncomms7986openalex-snapshot

Saccharina genomes provide novel insight into kelp biology

inferredcites →https://doi.org/10.1038/nmeth.2242openalex-snapshot

ORCAE: online resource for community annotation of eukaryotes

inferredcites →https://doi.org/10.1038/nplants.2015.209openalex-snapshot

A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction

inferredcites →https://doi.org/10.1046/j.1469-8137.2001.00076.xopenalex-snapshot

Ancestry of KNOX genes revealed by bryophyte (Physcomitrella patens) homologs

inferredcites →https://doi.org/10.1073/pnas.1102274108openalex-snapshot

OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus

inferredcites →https://doi.org/10.1080/073911012010525022openalex-snapshot

SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

inferredcites →https://doi.org/10.1093/dnares/dsw039openalex-snapshot

A draft genome of the brown alga,Cladosiphon okamuranus, S-strain: a platform for future studies of ‘mozuku’ biology

inferredcites →https://doi.org/10.1093/molbev/msp201openalex-snapshot

A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

inferredcites →https://doi.org/10.1093/nar/23.21.4407openalex-snapshot

AFLP: a new technique for DNA fingerprinting

inferredcites →https://doi.org/10.1093/nar/gkr995openalex-snapshot

GenomeView: a next-generation genome browser

inferredcites →https://doi.org/10.1093/nar/gkt381openalex-snapshot

Scalable web services for the PSIPRED Protein Analysis Workbench

inferredcites →https://doi.org/10.1101/cshperspect.a016139openalex-snapshot

On the Age of Eukaryotes: Evaluating Evidence from Fossils and Molecular Clocks

inferredcites →https://doi.org/10.1101/pdb.emo065821openalex-snapshot

Ectocarpus: A Model Organism for the Brown Algae

inferredcites →https://doi.org/10.1105/tpc.7.6.773openalex-snapshot

An N-Terminal Dimerization Domain Permits Homeodomain Proteins To Choose Compatible Partners and Initiate Sexual Development in the Mushroom Coprinus cinereus.

inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03273.xopenalex-snapshot

A sequence‐tagged genetic map for the brown alga Ectocarpus siliculosus provides large‐scale assembly of the genome sequence

inferredcites →https://doi.org/10.1111/j.1525-142x.2008.00271.xopenalex-snapshot

Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development

inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01562.xopenalex-snapshot

WHAT USES ARE MATING TYPES? THE “DEVELOPMENTAL SWITCH” MODEL

inferredcites →https://doi.org/10.1111/nph.12007openalex-snapshot

Non‐cell autonomous regulation of life cycle transitions in the model brown alga Ectocarpus

inferredcites →https://doi.org/10.1111/nph.14321openalex-snapshot

Re‐annotation, improved large‐scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus

inferredcites →https://doi.org/10.1126/sciadv.1602937openalex-snapshot

Homeodomain-like DNA binding proteins control the haploid-to-diploid transition in Dictyostelium

inferredcites →https://doi.org/10.1126/science.1230082openalex-snapshot

KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants

inferredcites →https://doi.org/10.1126/science.3306917openalex-snapshot

Transcriptional Regulation in the Yeast Life Cycle

inferredcites →https://doi.org/10.1128/ec.4.3.526-535.2005openalex-snapshot

Sex-Specific Homeodomain Proteins Sxi1α and Sxi2 a Coordinately Regulate Sexual Development in Cryptococcus neoformans

inferredcites →https://doi.org/10.1128/mcb.18.12.7317openalex-snapshot

The Mating-Type Proteins of Fission Yeast Induce Meiosis by Directly Activating mei3 Transcription

inferredcites →https://doi.org/10.1146/annurev-genet-120215-035227openalex-snapshot

Evolution in the Cycles of Life

inferredcites →https://doi.org/10.1155/2008/619832openalex-snapshot

Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics

inferredcites →https://doi.org/10.1186/1471-2105-9-393openalex-snapshot

HECTAR: A method to predict subcellular targeting in heterokonts

inferredcites →https://doi.org/10.1186/2047-217x-3-17openalex-snapshot

Data access for the 1,000 Plants (1KP) project

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1242/dev.016303openalex-snapshot

Life-cycle-generation-specific developmental processes are modified in theimmediate uprightmutant of the brown algaEctocarpus siliculosus

inferredcites →https://doi.org/10.1242/dev.141523openalex-snapshot

The Ectocarpus IMMEDIATE UPRIGHT gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes

inferredcites →https://doi.org/10.1371/journal.pgen.1004980openalex-snapshot

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

inferredcites →https://doi.org/10.1371/journal.pone.0012759openalex-snapshot

A Molecular Genetic Timescale for the Diversification of Autotrophic Stramenopiles (Ochrophyta): Substantive Underestimation of Putative Fossil Ages

inferredcites →https://doi.org/10.3389/fcell.2015.00008openalex-snapshot

Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/jpy.13034openalex-snapshot

Cryptic Haploid Stages in the Life Cycle of Leathesia marina (Chordariaceae, Phaeophyceae) Under In Vitro Culture

inferred← citeshttps://doi.org/10.70675/404d118ez7291z44d1zb087z58dbfdf3cf84openalex-snapshot

Genetic and cellular characterisation of parthenogenesis in the brown alga Ectocarpus sp.

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