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Phylogenomics, biogeography, and evolution in the American palm genus Brahea

https://doi.org/10.1101/467779
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular genetic analysis of two native desert palm genera,WashingtoniaandBrahea, from the Baja California Peninsula and Guadalupe Island
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WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas
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Relative rates of nucleotide substitution at the rbcl locus of monocotyledonous plants
inferredcites →https://doi.org/10.1007/bfb0102690openalex-snapshot
Comparison of weighted labelled trees
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Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate
inferredcites →https://doi.org/10.1016/j.jtbi.2015.03.006openalex-snapshot
Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
inferredcites →https://doi.org/10.1016/j.tecto.2011.09.018openalex-snapshot
The dynamic history of the Trans-Mexican Volcanic Belt and the Mexico subduction zone
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Mistaking geography for biology: inferring processes from species distributions
inferredcites →https://doi.org/10.1016/j.ympev.2015.12.015openalex-snapshot
Nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae)
inferredcites →https://doi.org/10.1038/ncomms2836openalex-snapshot
Taller plants have lower rates of molecular evolution
inferredcites →https://doi.org/10.1073/pnas.250413397openalex-snapshot
Cryptic vicariance in the historical assembly of a Baja California Peninsular Desert biota
inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
inferredcites →https://doi.org/10.1086/284325openalex-snapshot
Phylogenies and the Comparative Method
inferredcites →https://doi.org/10.1086/622303openalex-snapshot
The Physiography of Mexico
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu530openalex-snapshot
Quartet Inference from SNP Data Under the Coalescent Model
inferredcites →https://doi.org/10.1093/molbev/msl170openalex-snapshot
Bayesian Estimation of Concordance among Gene Trees
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkw955openalex-snapshot
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
inferredcites →https://doi.org/10.1093/oso/9780198546412.001.0001openalex-snapshot
The Comparative Method in Evolutionary Biology
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025731openalex-snapshot
A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy
inferredcites →https://doi.org/10.1093/sysbio/41.1.18openalex-snapshot
Procedures for the Analysis of Comparative Data Using Phylogenetically Independent Contrasts
inferredcites →https://doi.org/10.1093/sysbio/syp021openalex-snapshot
Complete Generic-Level Phylogenetic Analyses of Palms (Arecaceae) with Comparisons of Supertree and Supermatrix Approaches
inferredcites →https://doi.org/10.1093/sysbio/syr123openalex-snapshot
Miocene Dispersal Drives Island Radiations in the Palm Tribe Trachycarpeae (Arecaceae)
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syu056openalex-snapshot
Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
inferredcites →https://doi.org/10.1093/sysbio/syw100openalex-snapshot
Speciation with Gene Flow in North AmericanMyotisBats
inferredcites →https://doi.org/10.1093/sysbio/syx001openalex-snapshot
PHRAPL: Phylogeographic Inference Using Approximate Likelihoods
inferredcites →https://doi.org/10.1111/bij.12551openalex-snapshot
Phylogenomic analyses of species relationships in the genusSabal(Arecaceae) using targeted sequence capture
inferredcites →https://doi.org/10.1111/boj.12399openalex-snapshot
An introduction to plant phylogenomics with a focus on palms
inferredcites →https://doi.org/10.1111/boj.12401openalex-snapshot
Beyond Genera Palmarum : progress and prospects in palm systematics
inferredcites →https://doi.org/10.1111/boj.12465openalex-snapshot
Palms - emblems of tropical forests
inferredcites →https://doi.org/10.1111/brv.12154openalex-snapshot
Phylogenetic niche conservatism and the evolutionary basis of ecological speciation
inferredcites →https://doi.org/10.1111/ecog.03049openalex-snapshot
Opening the black box: an open‐source release of Maxent
inferredcites →https://doi.org/10.1111/evo.13203openalex-snapshot
Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a MediterraneanCampanula(Campanulaceae) clade
inferredcites →https://doi.org/10.1111/j.1095-8339.2006.00521.xopenalex-snapshot
A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogeny
inferredcites →https://doi.org/10.1111/j.1095-8339.2006.00523.xopenalex-snapshot
The fossil history of palms (Arecaceae) in Africa and new records from the Late Oligocene (28–27 Mya) of north-western Ethiopia
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00482.xopenalex-snapshot
ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00234.xopenalex-snapshot
Diversitree: comparative phylogenetic analyses of diversification in R
inferredcites →https://doi.org/10.1111/jbi.12910openalex-snapshot
A null biogeographical test for assessing ecological niche evolution
inferredcites →https://doi.org/10.1111/nph.13617openalex-snapshot
Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots
inferredcites →https://doi.org/10.1130/g34904.1openalex-snapshot
Oblique rifting ruptures continents: Example from the Gulf of California shear zone
inferredcites →https://doi.org/10.1130/spe278openalex-snapshot
Tectonostratigraphic Terranes and Tectonic Evolution of Mexico
inferredcites →https://doi.org/10.1139/b11-043openalex-snapshot
Introgressive hybridization betweenBrahea dulcisandBrahea nitida(Arecaceae) in Mexico: evidence from morphological and PCR–RAPD patterns
inferredcites →https://doi.org/10.1186/1741-7007-9-44openalex-snapshot
Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms
inferredcites →https://doi.org/10.1186/1746-4269-11-1openalex-snapshot
Ethnoecology of the palm Brahea dulcis (Kunth) Mart. in central Mexico
inferredcites →https://doi.org/10.1353/jsw.2015.0005openalex-snapshot
Assessing the Geological and Climatic Forcing of Biodiversity and Evolution Surrounding the Gulf of California
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1515/9780691197708openalex-snapshot
Field Guide to the Palms of the Americas
inferredcites →https://doi.org/10.2307/j.ctvcszzzdopenalex-snapshot
Field Guide to the Palms of the Americas
inferredcites →https://doi.org/10.3133/pp84openalex-snapshot
The Upper Cretaceous and Eocene floras of South Carolina and Georgia
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.34885/92openalex-snapshot
Genera Palmarum - The Evolution and Classification of the Palms
inferredcites →https://doi.org/10.3732/ajb.1500057openalex-snapshot
Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using plastid sequences derived from next‐generation sequencing
inferredcites →https://doi.org/10.4236/ajps.2013.42a060openalex-snapshot
Revealing an Endemic Herbivore-Palm Interaction in Remote Desert Oases of Baja California
inferredcites →https://doi.org/10.5860/choice.29-5104openalex-snapshot
The comparative method in evolutionary biology

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fpls.2019.00864openalex-snapshot
Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae
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