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Detecting and Correcting False Transients in Calcium Imaging

https://doi.org/10.1101/473470
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s10208-014-9191-2openalex-snapshot
Sharp Recovery Bounds for Convex Demixing, with Applications
inferredcites →https://doi.org/10.1016/0014-4886(76)90055-8openalex-snapshot
Place units in the hippocampus of the freely moving rat
inferredcites →https://doi.org/10.1016/j.neuron.2007.08.003openalex-snapshot
Imaging Large-Scale Neural Activity with Cellular Resolution in Awake, Mobile Mice
inferredcites →https://doi.org/10.1016/j.neuron.2009.08.009openalex-snapshot
Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data
inferredcites →https://doi.org/10.1016/j.neuron.2010.08.002openalex-snapshot
Broadly Tuned Response Properties of Diverse Inhibitory Neuron Subtypes in Mouse Visual Cortex
inferredcites →https://doi.org/10.1016/j.neuron.2010.08.042openalex-snapshot
Spatial Representation along the Proximodistal Axis of CA1
inferredcites →https://doi.org/10.1016/j.neuron.2015.02.022openalex-snapshot
Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance
inferredcites →https://doi.org/10.1016/j.neuron.2015.03.027openalex-snapshot
A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior
inferredcites →https://doi.org/10.1016/j.neuron.2015.11.037openalex-snapshot
Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data
inferredcites →https://doi.org/10.1016/j.neuron.2018.06.008openalex-snapshot
A Dedicated Population for Reward Coding in the Hippocampus
inferredcites →https://doi.org/10.1038/375682a0openalex-snapshot
Dendritic spines as basic functional units of neuronal integration
inferredcites →https://doi.org/10.1038/84397openalex-snapshot
A high signal-to-noise Ca2+ probe composed of a single green fluorescent protein
inferredcites →https://doi.org/10.1038/nature12354openalex-snapshot
Ultrasensitive fluorescent proteins for imaging neuronal activity
inferredcites →https://doi.org/10.1038/nn.2648openalex-snapshot
Functional imaging of hippocampal place cells at cellular resolution during virtual navigation
inferredcites →https://doi.org/10.1038/nn.2842openalex-snapshot
Measuring and interpreting neuronal correlations
inferredcites →https://doi.org/10.1038/nn.3866openalex-snapshot
Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields
inferredcites →https://doi.org/10.1038/nn.3867openalex-snapshot
Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging
inferredcites →https://doi.org/10.1038/nn.4365openalex-snapshot
Improving data quality in neuronal population recordings
inferredcites →https://doi.org/10.1038/s41598-018-21640-2openalex-snapshot
FISSA: A neuropil decontamination toolbox for calcium imaging signals
inferredcites →https://doi.org/10.1073/pnas.0506029102openalex-snapshot
Imaging input and output of neocortical networks in vivo
inferredcites →https://doi.org/10.1101/061507openalex-snapshot
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
inferredcites →https://doi.org/10.1101/313981openalex-snapshot
Automated cellular structure extraction in biological images with applications to calcium imaging data
inferredcites →https://doi.org/10.1109/cne.2003.1196904openalex-snapshot
Effects of spike sorting error on information content in multi-neuron recordings
inferredcites →https://doi.org/10.1111/j.2517-6161.1996.tb02080.xopenalex-snapshot
Regression Shrinkage and Selection Via the Lasso
inferredcites →https://doi.org/10.1117/1.nph.1.2.025008openalex-snapshot
Fast calcium sensor proteins for monitoring neural activity
inferredcites →https://doi.org/10.1126/science.1179867openalex-snapshot
Decorrelated Neuronal Firing in Cortical Microcircuits
inferredcites →https://doi.org/10.1126/science.2321027openalex-snapshot
Two-Photon Laser Scanning Fluorescence Microscopy
inferredcites →https://doi.org/10.1371/journal.pcbi.1006054openalex-snapshot
An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data
inferredcites →https://doi.org/10.1371/journal.pone.0020490openalex-snapshot
Denoising Two-Photon Calcium Imaging Data
inferredcites →https://doi.org/10.1371/journal.pone.0108697openalex-snapshot
Thy1-GCaMP6 Transgenic Mice for Neuronal Population Imaging In Vivo
inferredcites →https://doi.org/10.1523/jneurosci.0971-11.2011openalex-snapshot
Quality Metrics to Accompany Spike Sorting of Extracellular Signals
inferredcites →https://doi.org/10.1523/jneurosci.2985-09.2009openalex-snapshot
Functional Clustering of Neurons in Motor Cortex Determined by Cellular Resolution Imaging in Awake Behaving Mice
inferredcites →https://doi.org/10.48550/arxiv.1405.7430openalex-snapshot
BayesOpt: A Bayesian Optimization Library for Nonlinear Optimization, Experimental Design and Bandits
inferredcites →https://doi.org/10.7554/elife.38173openalex-snapshot
CaImAn an open source tool for scalable calcium imaging data analysis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.jneumeth.2021.109173openalex-snapshot
Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods
inferred← citeshttps://doi.org/10.1101/2020.08.31.272450openalex-snapshot
Database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging
inferred← citeshttps://doi.org/10.1101/2021.03.24.436279openalex-snapshot
Fast, scalable, and statistically robust cell extraction from large-scale neural calcium imaging datasets
inferred← citeshttps://doi.org/10.1109/icassp.2019.8683375openalex-snapshot
Learning Spatially-correlated Temporal Dictionaries for Calcium Imaging
inferred← citeshttps://doi.org/10.1109/tip.2022.3171414openalex-snapshot
GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging
inferred← citeshttps://doi.org/10.1117/1.nph.9.4.041402openalex-snapshot
Review of data processing of functional optical microscopy for neuroscience
inferred← citeshttps://doi.org/10.1117/12.3026093openalex-snapshot
Deep and shallow data science for multi-scale optical neuroscience
inferred← citeshttps://doi.org/10.1523/eneuro.0038-20.2020openalex-snapshot
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization
inferred← citeshttps://doi.org/10.3389/fncir.2022.891825openalex-snapshot
An Open-Source Real-Time Motion Correction Plug-In for Single-Photon Calcium Imaging of Head-Mounted Microscopy
inferred← citeshttps://doi.org/10.3389/fnins.2021.797421openalex-snapshot
Decontaminate Traces From Fluorescence Calcium Imaging Videos Using Targeted Non-negative Matrix Factorization
inferred← citeshttps://doi.org/10.48550/arxiv.1812.11904openalex-snapshot
Coarse--graining and hints of scaling in a population of 1000+ neurons
inferred← citeshttps://doi.org/10.70675/a8322da1z46a2z4e19zbbd3zffe1e9d8cc19openalex-snapshot
Evolution de l'activité de la région CA1 de l'hippocampe pendant le développement postnatal précoce
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