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Age-associated different transcriptome profiling in zebrafish and rat: insight into diversity of vertebrate aging

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-9861(19961209)376:2<253::aid-cne7>3.0.co;2-2openalex-snapshot

Increased expression of specific recognition molecules by retinal ganglion cells and by optic pathway glia accompanies the successful regeneration of retinal axons in adult zebrafish

inferredcites →https://doi.org/10.1002/(sici)1096-9861(19970127)377:4<577::aid-cne8>3.0.co;2-#openalex-snapshot

Axonal regrowth after spinal cord transection in adult zebrafish

inferredcites →https://doi.org/10.1002/1097-4695(20000905)44:3<289::aid-neu1>3.0.co;2-hopenalex-snapshot

Light-induced rod and cone cell death and regeneration in the adultalbino zebrafish (Danio rerio) retina

inferredcites →https://doi.org/10.1002/ar.21492openalex-snapshot

The Giant Danio (D. Aequipinnatus) as A Model of Cardiac Remodeling and Regeneration

inferredcites →https://doi.org/10.1007/s00294-018-0842-8openalex-snapshot

HMGB proteins involved in TOR signaling as general regulators of cell growth by controlling ribosome biogenesis

inferredcites →https://doi.org/10.1016/0167-4781(95)00116-xopenalex-snapshot

Hypoxia induces AP-1-regulated genes and AP-1 transcription factor binding in human endothelial and other cell types

inferredcites →https://doi.org/10.1016/0960-8966(94)90019-1openalex-snapshot

Age-related changes in collagen gene expression in the muscles of mdx dystrophic and normal mice

inferredcites →https://doi.org/10.1016/j.biocel.2014.06.002openalex-snapshot

Resveratrol increases anti-aging Klotho gene expression via the activating transcription factor 3/c-Jun complex-mediated signaling pathway

inferredcites →https://doi.org/10.1016/j.brainresbull.2007.10.053openalex-snapshot

Aging of the circadian system in zebrafish and the effects of melatonin on sleep and cognitive performance

inferredcites →https://doi.org/10.1016/j.cbpc.2014.02.002openalex-snapshot

Cardiac repair and regenerative potential in the goldfish (Carassius auratus) heart

inferredcites →https://doi.org/10.1016/j.cell.2013.08.004openalex-snapshot

The CRTC1-SIK1 Pathway Regulates Entrainment of the Circadian Clock

inferredcites →https://doi.org/10.1016/j.cell.2015.11.008openalex-snapshot

The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan

inferredcites →https://doi.org/10.1016/j.cell.2017.07.035openalex-snapshot

Aged Stem Cells Reprogram Their Daily Rhythmic Functions to Adapt to Stress

inferredcites →https://doi.org/10.1016/j.cell.2017.07.042openalex-snapshot

Circadian Reprogramming in the Liver Identifies Metabolic Pathways of Aging

inferredcites →https://doi.org/10.1016/j.celrep.2014.12.008openalex-snapshot

Insights into the Evolution of Longevity from the Bowhead Whale Genome

inferredcites →https://doi.org/10.1016/j.cmet.2016.05.013openalex-snapshot

A Ribosomal Perspective on Proteostasis and Aging

inferredcites →https://doi.org/10.1016/j.exger.2013.11.013openalex-snapshot

Zebrafish (Danio rerio) as a model for the study of aging and exercise: Physical ability and trainability decrease with age

inferredcites →https://doi.org/10.1016/j.gde.2005.08.007openalex-snapshot

HMG proteins: dynamic players in gene regulation and differentiation

inferredcites →https://doi.org/10.1016/j.gecco.2016.09.008openalex-snapshot

Rockfish size and age: The crossroads of spatial protection, central place fisheries and indigenous rights

inferredcites →https://doi.org/10.1016/j.mce.2013.11.009openalex-snapshot

Hypoxia induces a HIF-1α dependent signaling cascade to make a complex metabolic switch in SGBS-adipocytes

inferredcites →https://doi.org/10.1016/j.mod.2015.02.006openalex-snapshot

Regulation of gene expression mediating indeterminate muscle growth in teleosts

inferredcites →https://doi.org/10.1016/j.yjmcc.2015.11.005openalex-snapshot

Aging and the cardiac collagen matrix: Novel mediators of fibrotic remodelling

inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot

EMBOSS: The European Molecular Biology Open Software Suite

inferredcites →https://doi.org/10.1016/s0531-5565(02)00088-8openalex-snapshot

Life spans and senescent phenotypes in two strains of Zebrafish (Danio rerio)

inferredcites →https://doi.org/10.1016/s0531-5565(03)00108-6openalex-snapshot

The zebrafish as a vertebrate model of functional aging and very gradual senescence

inferredcites →https://doi.org/10.1038/36285openalex-snapshot

Mutation of the mouse klotho gene leads to a syndrome resembling ageing.

inferredcites →https://doi.org/10.1038/nature01960openalex-snapshot

Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan

inferredcites →https://doi.org/10.1038/nature05354openalex-snapshot

Resveratrol improves health and survival of mice on a high-calorie diet

inferredcites →https://doi.org/10.1038/nature08980openalex-snapshot

The genetics of ageing

inferredcites →https://doi.org/10.1038/nature09669openalex-snapshot

Identification of adult nephron progenitors capable of kidney regeneration in zebrafish

inferredcites →https://doi.org/10.1038/nature10533openalex-snapshot

Genome sequencing reveals insights into physiology and longevity of the naked mole rat

inferredcites →https://doi.org/10.1038/nature11861openalex-snapshot

mTOR is a key modulator of ageing and age-related disease

inferredcites →https://doi.org/10.1038/nature16187openalex-snapshot

Autophagy maintains stemness by preventing senescence

inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

inferredcites →https://doi.org/10.1038/nbt.2450openalex-snapshot

Differential analysis of gene regulation at transcript resolution with RNA-seq

inferredcites →https://doi.org/10.1038/ncomms3212openalex-snapshot

Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii

inferredcites →https://doi.org/10.1038/ncomms4230openalex-snapshot

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

inferredcites →https://doi.org/10.1038/nprot.2010.149openalex-snapshot

Hypoxia-induced retinopathy model in adult zebrafish

inferredcites →https://doi.org/10.1038/nrg.2016.150openalex-snapshot

Transcriptional architecture of the mammalian circadian clock

inferredcites →https://doi.org/10.1038/s41419-018-0894-1openalex-snapshot

Loss of ATF3 exacerbates liver damage through the activation of mTOR/p70S6K/ HIF-1α signaling pathway in liver inflammatory injury

inferredcites →https://doi.org/10.1038/s41586-018-0162-7openalex-snapshot

Disruption of the beclin 1–BCL2 autophagy regulatory complex promotes longevity in mice

inferredcites →https://doi.org/10.1073/pnas.0610774104openalex-snapshot

Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1

inferredcites →https://doi.org/10.1073/pnas.1116110108openalex-snapshot

Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age

inferredcites →https://doi.org/10.1073/pnas.1305814110openalex-snapshot

Circadian patterns of gene expression in the human brain and disruption in major depressive disorder

inferredcites →https://doi.org/10.1093/bioinformatics/btp073openalex-snapshot

Meta-analysis of age-related gene expression profiles identifies common signatures of aging

inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot

Quality control and preprocessing of metagenomic datasets

inferredcites →https://doi.org/10.1093/bioinformatics/btv770openalex-snapshot

Multi-omics enrichment analysis using the GeneTrail2 web service

inferredcites →https://doi.org/10.1093/genetics/141.4.1583openalex-snapshot

Temperature-sensitive mutations that cause stage-specific defects in Zebrafish fin regeneration.

inferredcites →https://doi.org/10.1093/gerona/61.8.795openalex-snapshot

Hypoxia and Expression of Hypoxia-Inducible Factor in the Aging Kidney

inferredcites →https://doi.org/10.1093/nar/gkq313openalex-snapshot

A new bioinformatics analysis tools framework at EMBL-EBI

inferredcites →https://doi.org/10.1111/acel.12264openalex-snapshot

ATF 4 activity: a common feature shared by many kinds of slow‐aging mice

inferredcites →https://doi.org/10.1111/j.1469-185x.1973.tb01009.xopenalex-snapshot

THE STRUCTURE OF FISH GILLS IN RELATION TO THEIR RESPIRATORY FUNCTION

inferredcites →https://doi.org/10.1111/j.1474-9726.2006.00267.xopenalex-snapshot

Lifespan extension by conditions that inhibit translation in Caenorhabditis elegans

inferredcites →https://doi.org/10.1111/j.1600-0838.2011.01377.xopenalex-snapshot

Structural, biochemical, cellular, and functional changes in skeletal muscle extracellular matrix with aging

inferredcites →https://doi.org/10.1126/science.1077857openalex-snapshot

Heart Regeneration in Zebrafish

inferredcites →https://doi.org/10.1126/science.1200708openalex-snapshot

Transient Regenerative Potential of the Neonatal Mouse Heart

inferredcites →https://doi.org/10.1126/science.aaf1703openalex-snapshot

Eye lens radiocarbon reveals centuries of longevity in the Greenland shark ( Somniosus microcephalus )

inferredcites →https://doi.org/10.1136/bmj.a439openalex-snapshot

Association between muscular strength and mortality in men: prospective cohort study

inferredcites →https://doi.org/10.1159/000215589openalex-snapshot

Update on Slow Aging and Negligible Senescence – A Mini-Review

inferredcites →https://doi.org/10.1159/000433534openalex-snapshot

Oxidation and Cognitive Impairment in the Aging Zebrafish

inferredcites →https://doi.org/10.1167/iovs.14-16103openalex-snapshot

Myocyte Dedifferentiation Drives Extraocular Muscle Regeneration in Adult Zebrafish

inferredcites →https://doi.org/10.1182/blood-2002-11-3541openalex-snapshot

Hmgb3: an HMG-box family member expressed in primitive hematopoietic cells that inhibits myeloid and B-cell differentiation

inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot

BLAST+: architecture and applications

inferredcites →https://doi.org/10.1186/1471-2318-10-55openalex-snapshot

Indicators of "Healthy Aging" in older women (65-69 years of age). A data-mining approach based on prediction of long-term survival

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1242/dev.072587openalex-snapshot

Regeneration of the adult zebrafish brain from neurogenic radial glia-type progenitors

inferredcites →https://doi.org/10.1242/dmm.023226openalex-snapshot

The short-lived African turquoise killifish: an emerging experimental model for ageing

inferredcites →https://doi.org/10.1242/jeb.038620openalex-snapshot

Growth and the regulation of myotomal muscle mass in teleost fish

inferredcites →https://doi.org/10.1371/journal.pone.0000014openalex-snapshot

Cognitive Aging in Zebrafish

inferredcites →https://doi.org/10.1371/journal.pone.0008737openalex-snapshot

Development and Regeneration of the Zebrafish Maxillary Barbel: A Novel Study System for Vertebrate Tissue Growth and Repair

inferredcites →https://doi.org/10.1523/jneurosci.4372-07.2008openalex-snapshot

Notch Signaling Regulates the Extent of Hair Cell Regeneration in the Zebrafish Lateral Line

inferredcites →https://doi.org/10.18632/aging.100070openalex-snapshot

mTOR's role in ageing: protein synthesis or autophagy?

inferredcites →https://doi.org/10.2337/db08-0628openalex-snapshot

Regeneration of the Pancreas in Adult Zebrafish

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2021.04.12.439551openalex-snapshot

Borf: Improved ORF prediction in de-novo assembled transcriptome annotation

inferred← citeshttps://doi.org/10.1186/s42826-024-00232-4openalex-snapshot

Drug screening for ischemic stroke using larvae and adult zebrafish model: a review

inferred← citeshttps://doi.org/10.3390/cells10040906openalex-snapshot

Induced Torpor as a Countermeasure for Low Dose Radiation Exposure in a Zebrafish Model

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