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Deciphering the Regulatory Landscape of γδ T Cell Development by Single-Cell RNA-Sequencing

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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TLRs to cytokines: Mechanistic insights from the imiquimod mouse model of psoriasis

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Eomes expression reports the progressive differentiation of IFN‐γ‐producing Th1‐like γδ T cells

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Isolation and Culture of Epithelial Stem Cells

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The Orphan Nuclear Receptor RORγt Directs the Differentiation Program of Proinflammatory IL-17+ T Helper Cells

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Impaired Epidermal to Dendritic T Cell Signaling Slows Wound Repair in Aged Skin

inferredcites →https://doi.org/10.1016/j.cellimm.2015.03.007openalex-snapshot

Gamma delta T-cell differentiation and effector function programming, TCR signal strength, when and how much?

inferredcites →https://doi.org/10.1016/j.immuni.2005.03.014openalex-snapshot

TCR Signal Strength Influences αβ/γδ Lineage Fate

inferredcites →https://doi.org/10.1016/j.immuni.2005.04.003openalex-snapshot

Attenuation of γδTCR Signaling Efficiently Diverts Thymocytes to the αβ Lineage

inferredcites →https://doi.org/10.1016/j.immuni.2006.05.010openalex-snapshot

Stage-Specific and Differential Notch Dependency at the αβ and γδ T Lineage Bifurcation

inferredcites →https://doi.org/10.1016/j.immuni.2009.08.006openalex-snapshot

γδ T Cells and the Lymphoid Stress-Surveillance Response

inferredcites →https://doi.org/10.1016/j.immuni.2010.03.005openalex-snapshot

Fate Mapping Reveals Separate Origins of T Cells and Myeloid Lineages in the Thymus

inferredcites →https://doi.org/10.1016/j.immuni.2011.08.001openalex-snapshot

Pivotal Role of Dermal IL-17-Producing γδ T Cells in Skin Inflammation

inferredcites →https://doi.org/10.1016/j.immuni.2012.06.003openalex-snapshot

Development of Interleukin-17-Producing γδ T Cells Is Restricted to a Functional Embryonic Wave

inferredcites →https://doi.org/10.1016/j.immuni.2013.01.010openalex-snapshot

A Network of High-Mobility Group Box Transcription Factors Programs Innate Interleukin-17 Production

inferredcites →https://doi.org/10.1016/j.it.2017.01.007openalex-snapshot

Thymic Determinants of γδ T Cell Differentiation

inferredcites →https://doi.org/10.1016/j.stem.2016.05.010openalex-snapshot

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data

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Diversity of murine gamma genes and expression in fetal and adult T lymphocytes

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c-MAF-dependent regulatory T cells mediate immunological tolerance to a gut pathobiont

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Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes

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Deficiency in IL-17-committed Vγ4+ γδ T cells in a spontaneous Sox13-mutant CD45.1+ congenic mouse substrain provides protection from dermatitis

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Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment

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An essential function for the nuclear receptor RORγt in the generation of fetal lymphoid tissue inducer cells

inferredcites →https://doi.org/10.1038/ni1371openalex-snapshot

Visualization of the earliest steps of γδ T cell development in the adult thymus

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BTLA is a lymphocyte inhibitory receptor with similarities to CTLA-4 and PD-1

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Validation of noise models for single-cell transcriptomics

inferredcites →https://doi.org/10.1038/nmeth.4662openalex-snapshot

FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data

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The External RNA Controls Consortium: a progress report

inferredcites →https://doi.org/10.1038/nri2781openalex-snapshot

γδ T cell effector functions: a blend of innate programming and acquired plasticity

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Six-of-the-best: unique contributions of γδ T cells to immunology

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Shades of grey — the blurring view of innate and adaptive immunity

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Developmental gene networks: a triathlon on the course to T cell identity

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γδ T cells: functional plasticity and heterogeneity

inferredcites →https://doi.org/10.1039/c5mb00663eopenalex-snapshot

ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

inferredcites →https://doi.org/10.1073/pnas.0903895106openalex-snapshot

TCR-inducible PLZF transcription factor required for innate phenotype of a subset of γδ T cells with restricted TCR diversity

inferredcites →https://doi.org/10.1073/pnas.1312872111openalex-snapshot

Enforcement of γδ-lineage commitment by the pre–T-cell receptor in precursors with weak γδ-TCR signals

inferredcites →https://doi.org/10.1084/jem.20130791openalex-snapshot

Sox5 and c-Maf cooperatively induce Th17 cell differentiation via RORγt induction as downstream targets of Stat3

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

inferredcites →https://doi.org/10.1111/jnc.13414openalex-snapshot

Sox13 functionally complements the related Sox5 and Sox6 as important developmental modulators in mouse spinal cord oligodendrocytes

inferredcites →https://doi.org/10.1126/science.1135344openalex-snapshot

Regulation of γδ Versus αß T Lymphocyte Differentiation by the Transcription Factor SOX13

inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot

Differential expression analysis for sequence count data

inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

inferredcites →https://doi.org/10.1371/journal.pone.0012776openalex-snapshot

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

inferredcites →https://doi.org/10.3389/fimmu.2013.00431openalex-snapshot

Molecular Mechanisms of Differentiation of Murine Pro-Inflammatory γδ T Cell Subsets

inferredcites →https://doi.org/10.3389/fimmu.2017.01399openalex-snapshot

Differentiation of IL-17-Producing Invariant Natural Killer T Cells Requires Expression of the Transcription Factor c-Maf

inferredcites →https://doi.org/10.4049/jimmunol.0802999openalex-snapshot

Imiquimod-Induced Psoriasis-Like Skin Inflammation in Mice Is Mediated via the IL-23/IL-17 Axis

inferredcites →https://doi.org/10.4049/jimmunol.0900123openalex-snapshot

c-Maf Regulates IL-10 Expression during Th17 Polarization

inferredcites →https://doi.org/10.4049/jimmunol.1000679openalex-snapshot

Fine-Scale Staging of T Cell Lineage Commitment in Adult Mouse Thymus

inferredcites →https://doi.org/10.4049/jimmunol.1002766openalex-snapshot

Unexpected Role for the B Cell-Specific Src Family Kinase B Lymphoid Kinase in the Development of IL-17–Producing γδ T Cells

inferredcites →https://doi.org/10.4049/jimmunol.1401813openalex-snapshot

Origins of γδ T Cell Effector Subsets: A Riddle Wrapped in an Enigma

inferredcites →https://doi.org/10.4049/jimmunol.1500939openalex-snapshot

PLZF Controls the Development of Fetal-Derived IL-17+Vγ6+ γδ T Cells

inferredcites →https://doi.org/10.4049/jimmunol.1501921openalex-snapshot

Effector γδ T Cell Differentiation Relies on Master but Not Auxiliary Th Cell Transcription Factors

inferredcites →https://doi.org/10.4049/jimmunol.1701134openalex-snapshot

Cutting Edge: c-Maf Is Required for Regulatory T Cells To Adopt RORγt+ and Follicular Phenotypes

inferredcites →https://doi.org/10.4049/jimmunol.181.9.5940openalex-snapshot

Identification of CD25+ γδ T Cells As Fetal Thymus-Derived Naturally Occurring IL-17 Producers

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The transcription factor c-Maf in sensory neuron development

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41592-020-01050-xopenalex-snapshot

Joint probabilistic modeling of single-cell multi-omic data with totalVI

inferred← citeshttps://doi.org/10.1101/2020.05.14.094334openalex-snapshot

The cIAP ubiquitin ligases sustain type 3 γδ T and innate lymphoid cells during aging to allow normal cutaneous and mucosal responses

inferred← citeshttps://doi.org/10.3389/fimmu.2020.00042openalex-snapshot

Regulation of γδ T Cell Effector Diversification in the Thymus

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