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Mountain lion genomes provide insights into genetic rescue of inbred populations
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat
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First Record of Puma concolor (Mammalia, Felidae) in the Early-Middle Pleistocene of South America
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Mesopredator spatial and temporal responses to large predators and human development in the Santa Cruz Mountains of California
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A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing
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Evolution of the extinct Sabretooths and the American cheetah-like cat
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Individual Behaviors Dominate the Dynamics of an Urban Mountain Lion Population Isolated by Roads
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Genomic Flatlining in the Endangered Island Fox
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Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome☆☆Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under Accession No. EU879967-EU879988.
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MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/j.yqres.2014.07.008openalex-snapshot
Last interglacial plant macrofossils and climates from Ziegler Reservoir, Snowmass Village, Colorado, USA
inferredcites →https://doi.org/10.1016/s1567-7249(01)00027-7openalex-snapshot
Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats
inferredcites →https://doi.org/10.1017/s0094837300010605openalex-snapshot
Ecogeography and the Great American Interchange
inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot
Inference of human population history from individual whole-genome sequences
inferredcites →https://doi.org/10.1038/ncomms12065openalex-snapshot
Long-read sequencing and de novo assembly of a Chinese genome
inferredcites →https://doi.org/10.1038/ncomms3433openalex-snapshot
The tiger genome and comparative analysis with lion and snow leopard genomes
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
inferredcites →https://doi.org/10.1038/nmeth.2639openalex-snapshot
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
inferredcites →https://doi.org/10.1038/nprot.2014.006openalex-snapshot
Full-length RNA-seq from single cells using Smart-seq2
inferredcites →https://doi.org/10.1038/s41559-017-0375-4openalex-snapshot
Genomic consequences of intensive inbreeding in an isolated wolf population
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Cougar Dispersal Patterns, Metapopulation Dynamics, and Conservation
inferredcites →https://doi.org/10.1073/pnas.1620754114openalex-snapshot
Fossil and genomic evidence constrains the timing of bison arrival in North America
inferredcites →https://doi.org/10.1073/pnas.1720115115openalex-snapshot
Earth BioGenome Project: Sequencing life for the future of life
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The Plio-Pleistocene cheetah-like cat Miracinonyx inexpectatus of North America
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr642openalex-snapshot
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/genetics/164.4.1567openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
inferredcites →https://doi.org/10.1093/jhered/91.3.186openalex-snapshot
Genomic ancestry of the American puma (Puma concolor)
inferredcites →https://doi.org/10.1093/jhered/esx015openalex-snapshot
Evolutionary and Functional Mitogenomics Associated With the Genetic Restoration of the Florida Panther
inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025763openalex-snapshot
Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals
inferredcites →https://doi.org/10.1098/rstb.2015.0138openalex-snapshot
Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data
inferredcites →https://doi.org/10.1101/306928openalex-snapshot
EquCab3, an Updated Reference Genome for the Domestic Horse
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.186668.114openalex-snapshot
Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
inferredcites →https://doi.org/10.1101/gr.193474.115openalex-snapshot
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
inferredcites →https://doi.org/10.1101/gr.5396706openalex-snapshot
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00278.xopenalex-snapshot
EVOLUTION OF THE GENOMIC RATE OF RECOMBINATION IN MAMMALS
inferredcites →https://doi.org/10.1126/science.1101476openalex-snapshot
Assessing the Causes of Late Pleistocene Extinctions on the Continents
inferredcites →https://doi.org/10.1126/science.1122277openalex-snapshot
The Late Miocene Radiation of Modern Felidae: A Genetic Assessment
inferredcites →https://doi.org/10.1126/science.1192891openalex-snapshot
Genetic Restoration of the Florida Panther
inferredcites →https://doi.org/10.1126/science.195.4282.981openalex-snapshot
A Cheetah-Like Cat in the North American Pleistocene
inferredcites →https://doi.org/10.1127/njgpa/233/2004/197openalex-snapshot
Kahlke, Ralf-Dietrich & Vekua, Abesalom K.: The Old World puma – Puma pardoides (OWEN, 1846) (Carnivora: Felidae) – in the Lower Villafranchian (Upper Pliocene) of Kvabebi (East Georgia, Transcaucasia) and its evolutionary and biogeographical significance
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/s13059-015-0837-4openalex-snapshot
Genomic legacy of the African cheetah, Acinonyx jubatus
inferredcites →https://doi.org/10.1186/s13059-016-1103-0openalex-snapshot
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1006529openalex-snapshot
A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy
inferredcites →https://doi.org/10.1371/journal.pone.0023501openalex-snapshot
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
inferredcites →https://doi.org/10.1371/journal.pone.0047768openalex-snapshot
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.1371/journal.pone.0131490openalex-snapshot
Survival and Mortality of Pumas (Puma concolor) in a Fragmented, Urbanizing Landscape
inferredcites →https://doi.org/10.1371/journal.pone.0158006openalex-snapshot
Individual and Population Level Resource Selection Patterns of Mountain Lions Preying on Mule Deer along an Urban-Wildland Gradient
inferredcites →https://doi.org/10.1590/s1415-47572013000400018openalex-snapshot
Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae)
inferredcites →https://doi.org/10.2305/iucn.uk.2015-4.rlts.t18868a50663436.enopenalex-snapshot
Puma concolor: Nielsen, C., Thompson, D., Kelly, M. & Lopez-Gonzalez, C.A.
inferredcites →https://doi.org/10.2307/1382247openalex-snapshot
Reproductive Characteristics of Male Florida Panthers: Comparative Studies from Florida, Texas, Colorado, Latin America, and North American Zoos
inferredcites →https://doi.org/10.2307/3808935openalex-snapshot
Dispersal of Juvenile Cougars in Fragmented Habitat
inferredcites →https://doi.org/10.3109/19401736.2012.668894openalex-snapshot
Repetitive sequences in Eurasian lynx ( Lynx lynx L. ) mitochondrial DNA control region
inferredcites →https://doi.org/10.5860/choice.41-5307openalex-snapshot
Wild mammals of North America: biology, management, and conservation
inferredcites →https://doi.org/10.5860/choice.48-3867openalex-snapshot
Biology and conservation of wild felids
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
inferredcites →https://doi.org/10.7208/chicago/9780226518237.001.0001openalex-snapshot
Wild Cats of the World
inferredcites →https://doi.org/10.7312/wood13040-009openalex-snapshot
7. The Blancan, Irvingtonian, and Rancholabrean Mammal Ages
inferredcites →https://doi.org/10.7717/peerj.4293openalex-snapshot
Are pumas subordinate carnivores, and does it matter?
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/ece3.6157openalex-snapshot
Are shed hair genomes the most effective noninvasive resource for estimating relationships in the wild?
inferred← citeshttps://doi.org/10.1007/13836_2020_73openalex-snapshot
Applications of Population Genomics for Understanding and Mitigating Wildlife Disease
inferred← citeshttps://doi.org/10.1093/gigascience/giac055openalex-snapshot
A decade of GigaScience: A perspective on conservation genetics
inferred← citeshttps://doi.org/10.1098/rstb.2020.0418openalex-snapshot
How methodological changes have influenced our understanding of population structure in threatened species: insights from tiger populations across India
inferred← citeshttps://doi.org/10.1186/s12915-019-0734-5openalex-snapshot
Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data
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