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Optimal metabolic states in cells

https://doi.org/10.1101/483867
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jtbi.1996.0161openalex-snapshot
Control Analysis of Unbranched Enzymatic Chains in States of Maximal Activity
inferredcites →https://doi.org/10.1016/j.automatica.2011.02.038openalex-snapshot
Cell design in bacteria as a convex optimization problem
inferredcites →https://doi.org/10.1016/j.bbagen.2011.05.014openalex-snapshot
Bacterial growth rate reflects a bottleneck in resource allocation
inferredcites →https://doi.org/10.1016/j.biosystems.2004.05.022openalex-snapshot
A theory of optimal differential gene expression
inferredcites →https://doi.org/10.1016/j.febslet.2013.07.028openalex-snapshot
A note on the kinetics of enzyme action: A decomposition that highlights thermodynamic effects
inferredcites →https://doi.org/10.1016/s0303-2647(98)00013-6openalex-snapshot
The modelling of metabolic systems. Structure, control and optimality
inferredcites →https://doi.org/10.1038/msb.2009.82openalex-snapshot
Shifts in growth strategies reflect tradeoffs in cellular economics
inferredcites →https://doi.org/10.1038/msb.2011.34openalex-snapshot
Economics of membrane occupancy and respiro‐fermentation
inferredcites →https://doi.org/10.1038/msb4100162openalex-snapshot
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
inferredcites →https://doi.org/10.1038/nbt1094-994openalex-snapshot
Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use
inferredcites →https://doi.org/10.1046/j.1432-1033.2002.03223.xopenalex-snapshot
Prediction of temporal gene expression
inferredcites →https://doi.org/10.1073/pnas.0609845104openalex-snapshot
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
inferredcites →https://doi.org/10.1073/pnas.1314810111openalex-snapshot
Visual account of protein investment in cellular functions
inferredcites →https://doi.org/10.1074/mcp.m111.013722openalex-snapshot
System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap
inferredcites →https://doi.org/10.1093/bioinformatics/btq141openalex-snapshot
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation
inferredcites →https://doi.org/10.1093/nar/gkt151openalex-snapshot
Spanning high-dimensional expression space using ribosome-binding site combinatorics
inferredcites →https://doi.org/10.1101/483891openalex-snapshot
The value structure of metabolic states
inferredcites →https://doi.org/10.1109/cdc.2009.5399827openalex-snapshot
Cell design in bacteria as a convex optimization problem
inferredcites →https://doi.org/10.1111/j.1432-1033.2004.04213.xopenalex-snapshot
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
inferredcites →https://doi.org/10.1126/science.1217405openalex-snapshot
Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space
inferredcites →https://doi.org/10.1186/1742-4682-3-41openalex-snapshot
Bringing metabolic networks to life: convenience rate law and thermodynamic constraints
inferredcites →https://doi.org/10.1186/1752-0509-8-1openalex-snapshot
Global dynamic optimization approach to predict activation in metabolic pathways
inferredcites →https://doi.org/10.1186/1752-0509-8-s5-s6openalex-snapshot
Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection
inferredcites →https://doi.org/10.1371/journal.pcbi.1005167openalex-snapshot
The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization
inferredcites →https://doi.org/10.1371/journal.pcbi.1006010openalex-snapshot
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield
inferredcites →https://doi.org/10.1371/journal.pone.0000144openalex-snapshot
Relationship between Thermodynamic Driving Force and One-Way Fluxes in Reversible Processes
inferredcites →https://doi.org/10.1529/biophysj.105.072645openalex-snapshot
Candidate States of Helicobacter pylori’s Genome-Scale Metabolic Network upon Application of “Loop Law” Thermodynamic Constraints

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-020-14751-wopenalex-snapshot
An analytical theory of balanced cellular growth
inferred← citeshttps://doi.org/10.1101/483891openalex-snapshot
The value structure of metabolic states
inferred← citeshttps://doi.org/10.1101/607374openalex-snapshot
An analytical theory of balanced cellular growth
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1011156openalex-snapshot
Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth
inferred← citeshttps://doi.org/10.3390/metabo12050434openalex-snapshot
Structural Thermokinetic Modelling
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