On the public citation graph

Ccube: A fast and robust method for estimating cancer cell fractions

https://doi.org/10.1101/484402
0 signed · 38 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2012.04.023openalex-snapshot
The Life History of 21 Breast Cancers
inferredcites →https://doi.org/10.1016/j.neunet.2006.06.009openalex-snapshot
Robust Bayesian clustering
inferredcites →https://doi.org/10.1038/nmeth.2883openalex-snapshot
PyClone: statistical inference of clonal population structure in cancer
inferredcites →https://doi.org/10.1186/1471-2105-15-35openalex-snapshot
Inferring clonal evolution of tumors from single nucleotide somatic mutations
inferredcites →https://doi.org/10.1186/s13059-015-0602-8openalex-snapshot
PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-3291-8_6openalex-snapshot
Reconstructing Phylogenetic Relationship in Bladder Cancer: A Methodological Overview
inferred← citeshttps://doi.org/10.1016/j.cels.2021.07.006openalex-snapshot
DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution
inferred← citeshttps://doi.org/10.1038/s41408-020-00367-2openalex-snapshot
An enhanced genetic model of relapsed IGH-translocated multiple myeloma evolutionary dynamics
inferred← citeshttps://doi.org/10.1038/s41408-021-00570-9openalex-snapshot
Cancer drivers and clonal dynamics in acute lymphoblastic leukaemia subtypes
inferred← citeshttps://doi.org/10.1038/s41467-020-14351-8openalex-snapshot
Inferring structural variant cancer cell fraction
inferred← citeshttps://doi.org/10.1038/s41467-021-24992-yopenalex-snapshot
CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data
inferred← citeshttps://doi.org/10.1038/s41467-021-26698-7openalex-snapshot
Benchmarking pipelines for subclonal deconvolution of bulk tumour sequencing data
inferred← citeshttps://doi.org/10.1038/s41467-023-43373-1openalex-snapshot
Genomic profiling of subcutaneous patient-derived xenografts reveals immune constraints on tumor evolution in childhood solid cancer
inferred← citeshttps://doi.org/10.1038/s41467-023-44158-2openalex-snapshot
Clinical application of tumour-in-normal contamination assessment from whole genome sequencing
inferred← citeshttps://doi.org/10.1038/s41467-025-59923-8openalex-snapshot
APOBEC affects tumor evolution and age at onset of lung cancer in smokers
inferred← citeshttps://doi.org/10.1038/s41467-025-66780-yopenalex-snapshot
Microbiome analysis of 940 lung cancers in never-smokers reveals lack of clinically relevant associations
inferred← citeshttps://doi.org/10.1038/s41586-024-08107-3openalex-snapshot
Origins and impact of extrachromosomal DNA
inferred← citeshttps://doi.org/10.1038/s41586-025-09219-0openalex-snapshot
The mutagenic forces shaping the genomes of lung cancer in never smokers
inferred← citeshttps://doi.org/10.1038/s41586-025-09825-yopenalex-snapshot
Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
inferred← citeshttps://doi.org/10.1038/s41587-024-02250-yopenalex-snapshot
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction
inferred← citeshttps://doi.org/10.1038/s41588-025-02474-xopenalex-snapshot
Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa672openalex-snapshot
A statistical approach for tracking clonal dynamics in cancer using longitudinal next-generation sequencing data
inferred← citeshttps://doi.org/10.1101/2021.02.13.429885openalex-snapshot
Computational validation of clonal and subclonal copy number alterations from bulk tumour sequencing
inferred← citeshttps://doi.org/10.1101/2022.06.14.495937openalex-snapshot
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
inferred← citeshttps://doi.org/10.1101/2024.01.30.24301554openalex-snapshot
Convergence for Inactivation of TGFβ Signaling Is a Common Feature of Advanced Pancreatic Cancer
inferred← citeshttps://doi.org/10.1101/2024.04.02.587805openalex-snapshot
APOBEC shapes tumor evolution and age at onset of lung cancer in smokers
inferred← citeshttps://doi.org/10.1101/2024.05.15.24307318openalex-snapshot
The mutagenic forces shaping the genomic landscape of lung cancer in never smokers
inferred← citeshttps://doi.org/10.1101/2024.07.03.601939openalex-snapshot
Subclonal mutation load predicts survival and response to immunotherapy in cancers with low to moderate tumor mutation burden
inferred← citeshttps://doi.org/10.1101/2025.02.01.636056openalex-snapshot
Longitudinal structural variant phylogenies define tumor evolution under therapeutic selection pressure in metastatic prostate cancer
inferred← citeshttps://doi.org/10.1101/2025.03.14.643063openalex-snapshot
Deciphering lung adenocarcinoma evolution and the role of LINE-1 retrotransposition
inferred← citeshttps://doi.org/10.1101/2025.06.12.655573openalex-snapshot
A Thiopurine-like Mutagenic Process Defines TGCT Subtypes
inferred← citeshttps://doi.org/10.1101/2025.09.09.25335109openalex-snapshot
Panorama of Chromosomal Instability in Lung Cancer
inferred← citeshttps://doi.org/10.1101/825778openalex-snapshot
CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data
inferred← citeshttps://doi.org/10.1101/836171openalex-snapshot
Correcting reference bias from the Illumina Isaac aligner enables analysis of cancer genomes
inferred← citeshttps://doi.org/10.1136/gutjnl-2025-337030openalex-snapshot
Comparison between germline and somatic loss-of-function RNF43 mutations reveals different genotype-phenotype associations and provides insights into the genetic mechanisms of colorectal tumourigenesis
inferred← citeshttps://doi.org/10.1186/s13059-024-03170-5openalex-snapshot
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc
inferred← citeshttps://doi.org/10.21203/rs.3.rs-6735635/v1openalex-snapshot
A Thiopurine-like Mutagenic Process Defines TGCT Subtypes
inferred← citeshttps://doi.org/10.70675/302fb443z8270z4f6ezbbf7z20e95637a756openalex-snapshot
Statistical methods for deciphering intra-tumor hereterogeneity : challenges and opportunities for cancer clinical management
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.