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Evolution of pathogenic and nonpathogenic yeasts mitochondrial genomes inferred by supertrees and supermatrices with divergence estimates based on relaxed molecular clocks
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Evolution of gene order and chromosome number inSaccharomyces,Kluyveromyces and related fungi
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Extinction: Late Devonian Mass Extinction
inferredcites →https://doi.org/10.1002/yea.1020openalex-snapshot
Non‐AUG translation initiation of mRNA encoding acidic ribosomal P2A protein in Candida albicans
inferredcites →https://doi.org/10.1007/bf00160154openalex-snapshot
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
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The structure of the small mitochondrial DNA of Kluyveromyces thermotolerans is likely to reflect the ancestral gene order in fungi
inferredcites →https://doi.org/10.1007/bf00436194openalex-snapshot
The mitochondrial genome of the fission yeast Schizosaccharomyces pombe
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Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1007/s00239-004-0164-yopenalex-snapshot
Fungi Evolution Revisited: Application of the Penalized Likelihood Method to a Bayesian Fungal Phylogeny Provides a New Perspective on Phylogenetic Relationships and Divergence Dates of Ascomycota Groups
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The primary structure of the mitochondrial genome of Saccharomyces cerevisiae — a review
inferredcites →https://doi.org/10.1016/1055-7903(92)90035-fopenalex-snapshot
Phylogenetic inference based on matrix representation of trees
inferredcites →https://doi.org/10.1016/j.cell.2009.04.014openalex-snapshot
Mitochondrial Dysfunction Leads to Nuclear Genome Instability via an Iron-Sulfur Cluster Defect
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Mitochondria–nucleus network for genome stability
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GEOCARBSULF: A combined model for Phanerozoic atmospheric O2 and CO2
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Consequences of genome duplication
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Succinate dehydrogenase – Assembly, regulation and role in human disease
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The evolution of supertrees
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Molecular phylogeny of the nutmeg shells (Neogastropoda, Cancellariidae)
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Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0022-5193(05)80104-3openalex-snapshot
The general stochastic model of nucleotide substitution
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Phylogenetic supertrees: Assembling the trees of life
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Evolution of the mitochondrial genetic system: an overview
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Molecular evidence for an ancient duplication of the entire yeast genome
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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1038/nature05634openalex-snapshot
The delayed rise of present-day mammals
inferredcites →https://doi.org/10.1038/ngeo923openalex-snapshot
Phanerozoic concentrations of atmospheric oxygen reconstructed from sedimentary charcoal
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Human population history revealed by a supertree approach
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The carbohydrate metabolism of certain pathological overgrowths
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Are we in the midst of the sixth mass extinction? A view from the world of amphibians
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Evidence from ammonoids and conodonts for multiple Early Triassic mass extinctions
inferredcites →https://doi.org/10.1073/pnas.76.4.1967openalex-snapshot
Rapid evolution of animal mitochondrial DNA.
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Atmospheric oxygen over Phanerozoic time
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The Saccharomyces cerevisiae NDE1 and NDE2 Genes Encode Separate Mitochondrial NADH Dehydrogenases Catalyzing the Oxidation of Cytosolic NADH
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SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
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Clann: investigating phylogenetic information through supertree analyses
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Clustal W and Clustal X version 2.0
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Genetic instability in budding and fission yeast—sources and mechanisms
inferredcites →https://doi.org/10.1093/gbe/evu028openalex-snapshot
High Variability of Mitochondrial Gene Order among Fungi
inferredcites →https://doi.org/10.1093/hmg/ddi454openalex-snapshot
Mitochondrial and nuclear DNA defects in Saccharomyces cerevisiae with mutations in DNA polymerase γ associated with progressive external ophthalmoplegia
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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
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Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/nar/21.17.4039openalex-snapshot
Non-universal decoding of the leucine codon CUG in severalCandidaspecies
inferredcites →https://doi.org/10.1093/nar/gkg134openalex-snapshot
A comparison of three fission yeast mitochondrial genomes
inferredcites →https://doi.org/10.1093/nar/gkg446openalex-snapshot
Mitochondria-mediated nuclear mutator phenotype in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/nar/gkq1345openalex-snapshot
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026160openalex-snapshot
Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syu105openalex-snapshot
Consensus and Confusion in Molluscan Trees: Evaluating Morphological and Molecular Phylogenies
inferredcites →https://doi.org/10.1098/rspb.2007.1250openalex-snapshot
A supertree of Temnospondyli: cladogenetic patterns in the most species-rich group of early tetrapods
inferredcites →https://doi.org/10.1098/rspb.2017.0227openalex-snapshot
Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution
inferredcites →https://doi.org/10.1098/rstb.2008.0031openalex-snapshot
Energy metabolism among eukaryotic anaerobes in light of Proterozoic ocean chemistry
inferredcites →https://doi.org/10.1099/mic.0.050039-0openalex-snapshot
Dynamic regulation of mitochondrial respiratory chain efficiency in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1111/1567-1364.12161openalex-snapshot
Why, when, and how did yeast evolve alcoholic fermentation?
inferredcites →https://doi.org/10.1111/j.1567-1364.2005.00007.xopenalex-snapshot
Why doesKluyveromyces lactisnot grow under anaerobic conditions? Comparison of essential anaerobic genes ofSaccharomyces cerevisiaewith theKluyveromyces lactisgenome
inferredcites →https://doi.org/10.1111/j.1567-1364.2010.00644.xopenalex-snapshot
Mitochondrial genome from the facultative anaerobe and petite-positive yeast Dekkera bruxellensis contains the NADH dehydrogenase subunit genes
inferredcites →https://doi.org/10.1111/j.1567-1364.2010.00715.xopenalex-snapshot
Candida albicans- a pre-whole genome duplication yeast - is predominantly aerobic and a poor ethanol producer
inferredcites →https://doi.org/10.1111/jse.12161openalex-snapshot
Are phylogenies derived from family‐level supertrees robust for studies on macroecological patterns along environmental gradients?
inferredcites →https://doi.org/10.1126/science.1056346openalex-snapshot
Molecular and Morphological Supertrees for Eutherian (Placental) Mammals
inferredcites →https://doi.org/10.1126/science.1061457openalex-snapshot
Molecular Evidence for the Early Colonization of Land by Fungi and Plants
inferredcites →https://doi.org/10.1126/science.1108019openalex-snapshot
Hypoxia, Global Warming, and Terrestrial Late Permian Extinctions
inferredcites →https://doi.org/10.1126/science.1200803openalex-snapshot
The Magnitude and Duration of Late Ordovician–Early Silurian Glaciation
inferredcites →https://doi.org/10.1126/science.215.4539.1501openalex-snapshot
Mass Extinctions in the Marine Fossil Record
inferredcites →https://doi.org/10.1126/science.277.5330.1259openalex-snapshot
Yeast as a Model Organism
inferredcites →https://doi.org/10.1128/ec.00031-12openalex-snapshot
Hypoxia and Fungal Pathogenesis: To Air or Not To Air?
inferredcites →https://doi.org/10.1128/ec.00107-06openalex-snapshot
Metabolic-State-Dependent Remodeling of the Transcriptome in Response to Anoxia and Subsequent Reoxygenation in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/ec.00303-10openalex-snapshot
Enzymatic Dysfunction of Mitochondrial Complex I of the Candida albicansgoa1Mutant Is Associated with Increased Reactive Oxidants and Cell Death
inferredcites →https://doi.org/10.1128/jb.176.18.5622-5630.1994openalex-snapshot
NADH dehydrogenase subunit genes in the mitochondrial DNA of yeasts
inferredcites →https://doi.org/10.1128/mmbr.68.4.603-616.2004openalex-snapshot
New Insights into Type II NAD(P)H:Quinone Oxidoreductases
inferredcites →https://doi.org/10.1130/0091-7613(2000)28<39:ttemef>2.0.co;2openalex-snapshot
Timing the end-Triassic mass extinction: First on land, then in the sea?
inferredcites →https://doi.org/10.1130/0091-7613(2001)029<0815:epcbab>2.0.co;2openalex-snapshot
End-Permian catastrophe by a bolide impact: Evidence of a gigantic release of sulfur from the mantle
inferredcites →https://doi.org/10.1130/0091-7613(2002)030<0251:tameat>2.0.co;2openalex-snapshot
Terrestrial and marine extinction at the Triassic-Jurassic boundary synchronized with major carbon-cycle perturbation: A link to initiation of massive volcanism?
inferredcites →https://doi.org/10.1142/s0219720013420055openalex-snapshot
EXACT SOLUTIONS FOR SPECIES TREE INFERENCE FROM DISCORDANT GENE TREES
inferredcites →https://doi.org/10.1146/annurev.earth.29.1.331openalex-snapshot
The Late Ordovician Mass Extinction
inferredcites →https://doi.org/10.1172/jci118798openalex-snapshot
Mitochondrial complex I deficiency leads to increased production of superoxide radicals and induction of superoxide dismutase.
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A higher-level MRP supertree of placental mammals.
inferredcites →https://doi.org/10.1186/1471-2148-6-99openalex-snapshot
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.
inferredcites →https://doi.org/10.1186/1471-2148-7-216openalex-snapshot
Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset
inferredcites →https://doi.org/10.1186/1741-7007-10-12openalex-snapshot
Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates
inferredcites →https://doi.org/10.1186/1748-7188-5-37openalex-snapshot
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
inferredcites →https://doi.org/10.1186/1748-7188-6-7openalex-snapshot
An experimental study of Quartets MaxCut and other supertree methods
inferredcites →https://doi.org/10.1186/s12862-014-0253-5openalex-snapshot
CompPhy: a web-based collaborative platform for comparing phylogenies
inferredcites →https://doi.org/10.1371/currents.tol.c1af68dda7c999ed9f1e4b2d2df7a08eopenalex-snapshot
Reweaving the Tapestry: a Supertree of Birds
inferredcites →https://doi.org/10.1371/journal.pbio.1002221openalex-snapshot
Origin of the Yeast Whole-Genome Duplication
inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.1534/genetics.115.181503openalex-snapshot
An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System
inferredcites →https://doi.org/10.1590/s0100-879x2004001000003openalex-snapshot
Respiration, oxidative phosphorylation, and uncoupling protein in Candida albicans
inferredcites →https://doi.org/10.2307/1222480openalex-snapshot
Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
inferredcites →https://doi.org/10.2741/3974openalex-snapshot
Mitochondrial and nuclear genomic integrity after oxidative damage in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.4003/006.027.0203openalex-snapshot
As Time Goes by: A Simple Fool's Guide to Molecular Clock Approaches in Invertebrates *
inferredcites →https://doi.org/10.4137/ebo.s4527openalex-snapshot
An Application of Supertree Methods to Mammalian Mitogenomic Sequences
inferredcites →https://doi.org/10.4202/app.2011.0058openalex-snapshot
The Alvarez Impact Theory of Mass Extinction; Limits to its Applicability and the “Great Expectations Syndrome”
inferredcites →https://doi.org/10.5194/cp-10-2053-2014openalex-snapshot
Effect of the Ordovician paleogeography on the (in)stability of the climate
inferredcites →https://doi.org/10.5860/choice.41-0322openalex-snapshot
When life nearly died: the greatest mass extinction of all time
inferredcites →https://doi.org/10.5860/choice.44-4470openalex-snapshot
Out of thin air: dinosaurs, birds, and Earth's ancient atmosphere
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