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Culturomics of Aerobic Anoxygenic Phototrophic Bacteria in Wheat Phyllosphere Revealed a Divergent Evolutionary Pattern of Photosynthesis Genes in Methylobacterium spp.

https://doi.org/10.1101/488148
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4020-8815-5_3openalex-snapshot
New Light on Aerobic Anoxygenic Phototrophs
inferredcites →https://doi.org/10.1007/978-3-319-46261-5_6openalex-snapshot
Aerobic Anoxygenic Phototrophs: Four Decades of Mystery
inferredcites →https://doi.org/10.1007/bf00049533openalex-snapshot
In vivo states and functions of carotenoids in an aerobic photosynthetic bacterium, Erythrobacter longus
inferredcites →https://doi.org/10.1016/j.envres.2015.03.027openalex-snapshot
Microbial diversity in bioaerosol samples causing ODTS compared to reference bioaerosol samples as measured using Illumina sequencing and MALDI-TOF
inferredcites →https://doi.org/10.1017/s1464793103006419openalex-snapshot
Vegetation dynamics – simulating responses to climatic change
inferredcites →https://doi.org/10.1038/ismej.2011.192openalex-snapshot
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
inferredcites →https://doi.org/10.1038/ismej.2017.126openalex-snapshot
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
inferredcites →https://doi.org/10.1038/nrmicro2910openalex-snapshot
Microbial life in the phyllosphere
inferredcites →https://doi.org/10.1038/s41579-018-0041-0openalex-snapshot
Culturing the human microbiota and culturomics
inferredcites →https://doi.org/10.1038/srep08365openalex-snapshot
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
inferredcites →https://doi.org/10.1073/pnas.0603530103openalex-snapshot
A proteomic study of Methylobacterium extorquens reveals a response regulator essential for epiphytic growth
inferredcites →https://doi.org/10.1073/pnas.1400295111openalex-snapshot
Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes
inferredcites →https://doi.org/10.1073/pnas.1734063100openalex-snapshot
Honor thy symbionts
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkt1226openalex-snapshot
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
inferredcites →https://doi.org/10.1094/phyto.1999.89.5.353openalex-snapshot
Bacterial Colonization of Leaves: A Spectrum of Strategies
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1111/1462-2920.12482openalex-snapshot
Spatial distribution analyses of natural phyllosphere‐colonizing bacteria on A rabidopsis thaliana revealed by fluorescence in situ hybridization
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02554.xopenalex-snapshot
Microbial rhodopsins on leaf surfaces of terrestrial plants
inferredcites →https://doi.org/10.1111/j.1758-2229.2011.00323.xopenalex-snapshot
Bacterial anoxygenic photosynthesis on plant leaf surfaces
inferredcites →https://doi.org/10.1128/aem.00208-11openalex-snapshot
Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters
inferredcites →https://doi.org/10.1128/aem.01014-09openalex-snapshot
BchY-Based Degenerate Primers Target All Types of Anoxygenic Photosynthetic Bacteria in a Single PCR
inferredcites →https://doi.org/10.1128/aem.60.12.4468-4477.1994openalex-snapshot
Coexistence among Epiphytic Bacterial Populations Mediated through Nutritional Resource Partitioning
inferredcites →https://doi.org/10.1128/aem.60.9.3128-3137.1994openalex-snapshot
Ecological Similarity and Coexistence of Epiphytic Ice-Nucleating (Ice + ) Pseudomonas syringae Strains and a Non-Ice-Nucleating (Ice - ) Biological Control Agent
inferredcites →https://doi.org/10.1128/mmbr.00019-15openalex-snapshot
Taxonomy, Physiology, and Natural Products of Actinobacteria
inferredcites →https://doi.org/10.1146/annurev.arplant.53.100301.135212openalex-snapshot
C OMPLEX E VOLUTION OF P HOTOSYNTHESIS
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
inferredcites →https://doi.org/10.1264/jsme2.21.251openalex-snapshot
Isolation and Characterization of Thallium-tolerant Bacteria from Heavy Metal-polluted River Sediment and Non-polluted Soils
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pone.0060120openalex-snapshot
CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics
inferredcites →https://doi.org/10.1371/journal.pone.0106704openalex-snapshot
Genome Information of Methylobacterium oryzae, a Plant-Probiotic Methylotroph in the Phyllosphere
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.2323/jgam.40.509openalex-snapshot
Construction of eco-collection of paddy field soil bacteria for population analysis.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fmicb.2021.740610openalex-snapshot
Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species
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