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Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/dvdy.24302openalex-snapshot

Bones in motion: Ontogeny of craniofacial development in sympatric arctic charr morphs

inferredcites →https://doi.org/10.1002/ece3.235openalex-snapshot

Fine‐scale parallel patterns in diversity of small benthic Arctic charr (Salvelinus alpinus) in relation to the ecology of lava/groundwater habitats

inferredcites →https://doi.org/10.1002/ece3.3806openalex-snapshot

Basic description and some notes on the evolution of seven sympatric morphs of Dolly Varden Salvelinus malma from the Lake Kronotskoe Basin

inferredcites →https://doi.org/10.1006/anbe.1993.1140openalex-snapshot

Genetically based differences in foraging behaviour among sympatric morphs of arctic charr (Pisces: Salmonidae)

inferredcites →https://doi.org/10.1007/978-1-4684-4652-4_1openalex-snapshot

Tetraploidy and the Evolution of Salmonid Fishes

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SNP Genotyping: The KASP Assay

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Integrating Phenotypic Plasticity Within an Ecological Genomics Framework: Recent Insights from the Genomics, Evolution, Ecology, and Fitness of Plasticity

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Eco-Evo-Devo: The Time Has Come

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Habitat use of arctic charrSalvelinus alpinus in Thingvallavatn, Iceland

inferredcites →https://doi.org/10.1007/s10641-008-9379-xopenalex-snapshot

Charr truth: sympatric differentiation in Salvelinus species

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Mitochondrial DNA variation in Arctic charr (Salvelinus alpinus (L.)) morphs from Loch Rannoch, Scotland: evidence for allopatric and peripatric divergence

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Novel RAD sequence data reveal a lack of genomic divergence between dietary ecotypes in a landlocked salmonid population

inferredcites →https://doi.org/10.1016/j.cub.2011.11.045openalex-snapshot

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

inferredcites →https://doi.org/10.1016/j.cub.2012.10.048openalex-snapshot

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

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Postnatal Deamidation of 4E-BP2 in Brain Enhances Its Association with Raptor and Alters Kinetics of Excitatory Synaptic Transmission

inferredcites →https://doi.org/10.1016/j.nlm.2006.08.012openalex-snapshot

Behavioral alterations in mice lacking the translation repressor 4E-BP2

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Basic Local Alignment Search Tool

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Resource polymorphisms in vertebrates

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Sympatric speciation in animals: the ugly duckling grows up

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Adaptive Speciation in Northern Freshwater Fishes

inferredcites →https://doi.org/10.1038/hdy.2010.161openalex-snapshot

Evolution of adaptive diversity and genetic connectivity in Arctic charr (Salvelinus alpinus) in Iceland

inferredcites →https://doi.org/10.1038/hdy.2014.74openalex-snapshot

Evolution and origin of sympatric shallow-water morphotypes of Lake Trout, Salvelinus namaycush, in Canada’s Great Bear Lake

inferredcites →https://doi.org/10.1038/ismej.2012.97openalex-snapshot

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland

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The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches

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Adaptation and diversification on islands

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Autism-related deficits via dysregulated eIF4E-dependent translational control

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Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

inferredcites →https://doi.org/10.1038/nature17164openalex-snapshot

The Atlantic salmon genome provides insights into rediploidization

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Near-optimal probabilistic RNA-seq quantification

inferredcites →https://doi.org/10.1038/ncomms11693openalex-snapshot

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

inferredcites →https://doi.org/10.1038/ncomms12736openalex-snapshot

Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish

inferredcites →https://doi.org/10.1038/ncomms4657openalex-snapshot

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

inferredcites →https://doi.org/10.1038/nmeth.2251openalex-snapshot

Streaming fragment assignment for real-time analysis of sequencing experiments

inferredcites →https://doi.org/10.1038/nrg.2016.133openalex-snapshot

Making sense of genomic islands of differentiation in light of speciation

inferredcites →https://doi.org/10.1038/nrg3644openalex-snapshot

Genomics and the origin of species

inferredcites →https://doi.org/10.1038/s41559-019-1044-6openalex-snapshot

Sex-dependent dominance maintains migration supergene in rainbow trout

inferredcites →https://doi.org/10.1073/pnas.0901397106openalex-snapshot

Natural selection in action during speciation

inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot

adegenet : a R package for the multivariate analysis of genetic markers

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp696openalex-snapshot

pegas: an R package for population genetics with an integrated–modular approach

inferredcites →https://doi.org/10.1093/bioinformatics/btr174openalex-snapshot

BamTools: a C++ API and toolkit for analyzing and managing BAM files

inferredcites →https://doi.org/10.1093/bioinformatics/btu168openalex-snapshot

VariantAnnotation : a Bioconductor package for exploration and annotation of genetic variants

inferredcites →https://doi.org/10.1093/gbe/evw262openalex-snapshot

Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps

inferredcites →https://doi.org/10.1093/gbe/evy201openalex-snapshot

The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication

inferredcites →https://doi.org/10.1093/genetics/155.2.671openalex-snapshot

Quantitative Trait Loci Affecting Components of Wing Shape in Drosophila melanogaster

inferredcites →https://doi.org/10.1093/genetics/96.3.627openalex-snapshot

REGULATORY GENES CONTROLLING MITOSIS IN THE FISSION YEAST SCHIZOSACCHAROMYCES POMBE

inferredcites →https://doi.org/10.1093/hmg/ddi093openalex-snapshot

A functional single nucleotide polymorphism in the core promoter region of CALM1 is associated with hip osteoarthritis in Japanese

inferredcites →https://doi.org/10.1098/rspb.2013.2881openalex-snapshot

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

inferredcites →https://doi.org/10.1098/rstb.2008.0051openalex-snapshot

Fission and fusion of Darwin's finches populations

inferredcites →https://doi.org/10.1098/rstb.2009.0274openalex-snapshot

On the origin of species: insights from the ecological genomics of lake whitefish

inferredcites →https://doi.org/10.1098/rstb.2011.0198openalex-snapshot

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing

inferredcites →https://doi.org/10.1101/gr.196485.115openalex-snapshot

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

inferredcites →https://doi.org/10.1111/1755-0998.12186openalex-snapshot

Accuracy of allele frequency estimation using pooled RNA ‐Seq

inferredcites →https://doi.org/10.1111/eff.12169openalex-snapshot

Evidence for genetic distinction among sympatric ecotypes of Arctic char ( S alvelinus alpinus) in south‐western A laskan lakes

inferredcites →https://doi.org/10.1111/evo.12075openalex-snapshot

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

inferredcites →https://doi.org/10.1111/evo.12106openalex-snapshot

DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

inferredcites →https://doi.org/10.1111/evo.12139openalex-snapshot

LANDSCAPE GENOMICS IN ATLANTIC SALMON ( SALMO SALAR ): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION

inferredcites →https://doi.org/10.1111/faf.12114openalex-snapshot

If Arctic charrSalvelinus alpinusis ‘the most diverse vertebrate’, what is the lake charrSalvelinus namaycush?

inferredcites →https://doi.org/10.1111/j.1095-8312.1986.tb01737.xopenalex-snapshot

Genetic differentiation among local populations and morphotypes of Arctic charr, Salvelinus alpinus

inferredcites →https://doi.org/10.1111/j.1095-8312.1989.tb01579.xopenalex-snapshot

Ontogeny of trophic morphology in four sympatric morphs of arctic charr Salvelinus alpinus in Thingvallavatn, Iceland*

inferredcites →https://doi.org/10.1111/j.1095-8312.2012.01906.xopenalex-snapshot

Convergent evolutionary processes driven by foraging opportunity in two sympatric morph pairs of Arctic charr with contrasting post-glacial origins

inferredcites →https://doi.org/10.1111/j.1095-8649.2009.02419.xopenalex-snapshot

Along the speciation continuum in sticklebacks

inferredcites →https://doi.org/10.1111/j.1095-8649.2011.03030.xopenalex-snapshot

Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae

inferredcites →https://doi.org/10.1111/j.1365-294x.1996.tb00372.xopenalex-snapshot

Molecular genetic examination of the polymorphic Arctic charr Salvelinus alpinus of Thingvallavatn, Iceland

inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02149.xopenalex-snapshot

Population genetic structure of Arctic Charr, Salvelinus alpinus from northwest Europe on large and small spatial scales

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04663.xopenalex-snapshot

Molecular evidence of the survival of subterranean amphipods (Arthropoda) during Ice Age underneath glaciers in Iceland

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05172.xopenalex-snapshot

The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression

inferredcites →https://doi.org/10.1111/j.1420-9101.2011.02301.xopenalex-snapshot

Phenotypic plasticity, heterochrony and ontogenetic repatterning during juvenile development of divergent Arctic charr (Salvelinus alpinus)

inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00828.xopenalex-snapshot

hierfstat , a package for r to compute and test hierarchical F ‐statistics

inferredcites →https://doi.org/10.1111/j.1525-142x.2010.00410.xopenalex-snapshot

Morphological variation over ontogeny and environments in resource polymorphic arctic charr (Salvelinus alpinus)

inferredcites →https://doi.org/10.1111/mec.12939openalex-snapshot

Adaptive divergence between lake and stream populations of an E ast A frican cichlid fish

inferredcites →https://doi.org/10.1111/mec.13933openalex-snapshot

Genomic islands of divergence linked to ecotypic variation in sockeye salmon

inferredcites →https://doi.org/10.1111/mec.14018openalex-snapshot

Investigating the extent of parallelism in morphological and genomic divergence among lake trout ecotypes in Lake Superior

inferredcites →https://doi.org/10.1111/mec.14195openalex-snapshot

Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa

inferredcites →https://doi.org/10.1111/mec.14290openalex-snapshot

Speciation as a sieve for ancestral polymorphism

inferredcites →https://doi.org/10.1126/sciadv.1603198openalex-snapshot

The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation

inferredcites →https://doi.org/10.1126/science.1070315openalex-snapshot

Unpredictable Evolution in a 30-Year Study of Darwin's Finches

inferredcites →https://doi.org/10.1126/science.aac9927openalex-snapshot

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

inferredcites →https://doi.org/10.1134/s0032945213100044openalex-snapshot

The most variable vertebrate on Earth

inferredcites →https://doi.org/10.1139/cjfas-2014-0014openalex-snapshot

Parallel evolutionary divergence in Arctic char Salvelinus alpinus complex from Transbaikalia: variation in differentiation degree and segregation of genetic diversity among sympatric forms

inferredcites →https://doi.org/10.1139/f88-182openalex-snapshot

Life History Variation of Polymorphic Arctic Charr (Salvelinus alpinus) in Thingvallavatn, Iceland

inferredcites →https://doi.org/10.1139/f96-098openalex-snapshot

Genetic basis of life history variations among sympatric morphs of Arctic char Salvelinus alpinus

inferredcites →https://doi.org/10.1139/g05-067openalex-snapshot

A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae)

inferredcites →https://doi.org/10.1146/annurev-ecolsys-120213-091818openalex-snapshot

Speciation in Freshwater Fishes

inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.111openalex-snapshot

EVOLUTIONARY SIGNIFICANCE OF RESOURCE POLYMORPHISMS IN FISHES, AMPHIBIANS, AND BIRDS

inferredcites →https://doi.org/10.1172/jci32032openalex-snapshot

Gas1 is a modifier for holoprosencephaly and genetically interacts with sonic hedgehog

inferredcites →https://doi.org/10.1186/1471-2156-12-68openalex-snapshot

Genome evolution in the fish family salmonidae: generation of a brook charr genetic map and comparisons among charrs (Arctic charr and brook charr) with rainbow trout

inferredcites →https://doi.org/10.1186/2041-9139-5-40openalex-snapshot

Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr

inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot

Gene ontology analysis for RNA-seq: accounting for selection bias

inferredcites →https://doi.org/10.1186/s12864-017-3877-1openalex-snapshot

SalmoBase: an integrated molecular data resource for Salmonid species

inferredcites →https://doi.org/10.1186/s13227-015-0022-6openalex-snapshot

Differential expression of the aryl hydrocarbon receptor pathway associates with craniofacial polymorphism in sympatric Arctic charr

inferredcites →https://doi.org/10.1242/jeb.131714openalex-snapshot

Diet-induced phenotypic plasticity in European eel (Anguilla anguilla)

inferredcites →https://doi.org/10.12688/f1000research.6402.2openalex-snapshot

The developmental transcriptome of contrasting Arctic charr (Salvelinus alpinus) morphs

inferredcites →https://doi.org/10.1371/journal.pbio.1002379openalex-snapshot

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

inferredcites →https://doi.org/10.1371/journal.pgen.1002752openalex-snapshot

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

inferredcites →https://doi.org/10.1371/journal.pgen.1005628openalex-snapshot

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

inferredcites →https://doi.org/10.1371/journal.pgen.1005860openalex-snapshot

What Is Speciation?

inferredcites →https://doi.org/10.1371/journal.pone.0008451openalex-snapshot

Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers

inferredcites →https://doi.org/10.1371/journal.pone.0066389openalex-snapshot

Validation of Reference Genes for Expression Studies during Craniofacial Development in Arctic Charr

inferredcites →https://doi.org/10.1371/journal.pone.0069402openalex-snapshot

Differentiation at the MHCIIα and Cath2 Loci in Sympatric Salvelinus alpinus Resource Morphs in Lake Thingvallavatn

inferredcites →https://doi.org/10.1371/journal.pone.0106084openalex-snapshot

Patterns of MiRNA Expression in Arctic Charr Development

inferredcites →https://doi.org/10.1371/journal.pone.0195461openalex-snapshot

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

inferredcites →https://doi.org/10.1371/journal.pone.0204076openalex-snapshot

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

inferredcites →https://doi.org/10.1534/g3.116.038026openalex-snapshot

A SNP Based Linkage Map of the Arctic Charr ( Salvelinus alpinus ) Genome Provides Insights into the Diploidization Process After Whole Genome Duplication

inferredcites →https://doi.org/10.1534/g3.118.200919openalex-snapshot

The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids

inferredcites →https://doi.org/10.1534/genetics.103.021766openalex-snapshot

Association Between Nucleotide Variation in Egfr and Wing Shape in Drosophila melanogaster

inferredcites →https://doi.org/10.1534/genetics.104.035766openalex-snapshot

Replication of an Egfr-Wing Shape Association in a Wild-Caught Cohort of Drosophila melanogaster

inferredcites →https://doi.org/10.1554/0014-3820(2001)055[0573:hpoacs]2.0.co;2openalex-snapshot

HOLARCTIC PHYLOGEOGRAPHY OF ARCTIC CHARR (SALVELINUS ALPINUS L.) INFERRED FROM MITOCHONDRIAL DNA SEQUENCES

inferredcites →https://doi.org/10.1608/frj-3.1.3openalex-snapshot

The Charr Problem Revisited: Exceptional Phenotypic Plasticity Promotes Ecological Speciation in Postglacial Lakes

inferredcites →https://doi.org/10.2307/3545042openalex-snapshot

Geology of the Thingvallavatn Area

inferredcites →https://doi.org/10.2307/3545056openalex-snapshot

The Arctic Charr Salvelinus alpinus in Thingvallavatn

inferredcites →https://doi.org/10.2307/5505openalex-snapshot

Diet Differentiation in Polymorphic Arctic Charr in Thingvallavatn, Iceland

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.33799/jokull2008.58.343openalex-snapshot

Late Weichselian and Holocene environmental history of Iceland

inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot

Haplotype-based variant detection from short-read sequencing

inferredcites →https://doi.org/10.5962/bhl.title.82303openalex-snapshot

On the origin of species by means of natural selection, or, The preservation of favoured races in the struggle for life

inferredcites →https://doi.org/10.7717/peerj.4345openalex-snapshot

Differential gene expression during early development in recently evolved and sympatric Arctic charr morphs

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.anbehav.2021.02.022openalex-snapshot

Animal personality adds complexity to the processes of divergence between sympatric morphs of Arctic charr

inferred← citeshttps://doi.org/10.1111/eva.12983openalex-snapshot

“ And if you gaze long into an abyss, the abyss gazes also into thee ”: four morphs of Arctic charr adapting to a depth gradient in Lake Tinnsjøen

inferred← citeshttps://doi.org/10.1111/mec.16033openalex-snapshot

Genomic basis of deep‐water adaptation in Arctic Charr (Salvelinus alpinus) morphs

inferred← citeshttps://doi.org/10.1186/s12862-021-01904-8openalex-snapshot

Multivariate analysis of morphology, behaviour, growth and developmental timing in hybrids brings new insights into the divergence of sympatric Arctic charr morphs

inferred← citeshttps://doi.org/10.6084/m9.figshare.16584408openalex-snapshot

Additional file 1 of Multivariate analysis of morphology, behaviour, growth and developmental timing in hybrids brings new insights into the divergence of sympatric Arctic charr morphs

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