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Resequencing and association mapping of the generalist pathogen Botrytis cinerea

https://doi.org/10.1101/489799
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142905.hg0119s68openalex-snapshot
Quality Control Procedures for Genome‐Wide Association Studies
inferredcites →https://doi.org/10.1007/s11033-011-1185-4openalex-snapshot
Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana–Botrytis cinerea interaction
inferredcites →https://doi.org/10.1016/b978-0-12-411552-1.00004-1openalex-snapshot
Botrytis cinerea (Gray Mold)
inferredcites →https://doi.org/10.1016/j.fgb.2015.05.001openalex-snapshot
QTL mapping of fungicide sensitivity reveals novel genes and pleiotropy with melanization in the pathogen Zymoseptoria tritici
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Thiamin metabolism and thiamin diphosphate-dependent enzymes in the yeast Saccharomyces cerevisiae: genetic regulation
inferredcites →https://doi.org/10.1016/s0960-9822(00)00560-1openalex-snapshot
The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea
inferredcites →https://doi.org/10.1021/cb800225vopenalex-snapshot
Sesquiterpene Synthase from the Botrydial Biosynthetic Gene Cluster of the Phytopathogen Botrytis cinerea
inferredcites →https://doi.org/10.1038/hdy.2015.111openalex-snapshot
QTL mapping of temperature sensitivity reveals candidate genes for thermal adaptation and growth morphology in the plant pathogenic fungus Zymoseptoria tritici
inferredcites →https://doi.org/10.1038/ng.2310openalex-snapshot
Genome-wide efficient mixed-model analysis for association studies
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Genome evolution across 1,011 Saccharomyces cerevisiae isolates
inferredcites →https://doi.org/10.1073/pnas.1503159112openalex-snapshot
Clonal reproduction in fungi
inferredcites →https://doi.org/10.1073/pnas.1710980115openalex-snapshot
Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
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The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bty875openalex-snapshot
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
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Permutation Tests for Multiple Loci Affecting a Quantitative Character
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A Test of Neutrality Based on Interlocus Associations
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SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
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SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes
inferredcites →https://doi.org/10.1093/molbev/msu136openalex-snapshot
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1094/mpmi-09-15-0218-ropenalex-snapshot
Genome-Wide Association Study Identifies Novel Candidate Genes for Aggressiveness, Deoxynivalenol Production, and Azole Sensitivity in Natural Field Populations ofFusarium graminearum
inferredcites →https://doi.org/10.1094/mpmi-20-9-1126openalex-snapshot
Elevated Genetic Variation Within Virulence-AssociatedBotrytis cinereaPolygalacturonase Loci
inferredcites →https://doi.org/10.1094/pd-89-1083openalex-snapshot
Genetic Structure of Botrytis cinerea Populations from Different Host Plants in California
inferredcites →https://doi.org/10.1094/phyto-02-16-0113-fiopenalex-snapshot
Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors inParastagonospora nodorum
inferredcites →https://doi.org/10.1101/023754openalex-snapshot
Comparing Variant Call Files for Performance Benchmarking of Next-Generation Sequencing Variant Calling Pipelines
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Circos: An information aesthetic for comparative genomics
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1104/pp.106.082024openalex-snapshot
CYP71B15 (PAD3) Catalyzes the Final Step in Camalexin Biosynthesis
inferredcites →https://doi.org/10.1105/tpc.014167openalex-snapshot
The BOTRYTIS SUSCEPTIBLE1 Gene Encodes an R2R3MYB Transcription Factor Protein That Is Required for Biotic and Abiotic Stress Responses in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.11.12.2419openalex-snapshot
Arabidopsis PAD3 , a Gene Required for Camalexin Biosynthesis, Encodes a Putative Cytochrome P450 Monooxygenase
inferredcites →https://doi.org/10.1105/tpc.16.00915openalex-snapshot
Quantitative Resistance: More Than Just Perception of a Pathogen
inferredcites →https://doi.org/10.1105/tpc.17.00348openalex-snapshot
Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid and Salicylic Acid Networks within the Arabidopsis/Botrytis Pathosystem
inferredcites →https://doi.org/10.1111/1462-2920.12563openalex-snapshot
Population structure and temporal maintenance of the multihost fungal pathogen B otrytis cinerea : causes and implications for disease management
inferredcites →https://doi.org/10.1111/j.0960-7412.2004.02059.xopenalex-snapshot
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/j.1364-3703.2010.00692.xopenalex-snapshot
The Botrytis cinerea phytotoxin botcinic acid requires two polyketide synthases for production and has a redundant role in virulence with botrydial
inferredcites →https://doi.org/10.1111/j.1364-3703.2011.00783.xopenalex-snapshot
The Top 10 fungal pathogens in molecular plant pathology
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1111/mpp.12384openalex-snapshot
A gapless genome sequence of the fungus Botrytis cinerea
inferredcites →https://doi.org/10.1128/ec.00164-12openalex-snapshot
Genome Update of Botrytis cinerea Strains B05.10 and T4
inferredcites →https://doi.org/10.1128/ec.2.1.1-8.2003openalex-snapshot
Fatal Attraction: Nonself Recognition and Heterokaryon Incompatibility in Filamentous Fungi
inferredcites →https://doi.org/10.1128/genomea.00252-13openalex-snapshot
Draft Genome Sequence of Botrytis cinerea BcDW1, Inoculum for Noble Rot of Grape Berries
inferredcites →https://doi.org/10.1146/annurev.genet.34.1.165openalex-snapshot
THE GENETICS OF HYPHAL FUSION AND VEGETATIVE INCOMPATIBILITY IN FILAMENTOUS ASCOMYCETE FUNGI
inferredcites →https://doi.org/10.1186/1471-2105-14-45openalex-snapshot
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms
inferredcites →https://doi.org/10.1186/2193-1801-3-431openalex-snapshot
STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface
inferredcites →https://doi.org/10.1186/s12864-015-2166-0openalex-snapshot
Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination
inferredcites →https://doi.org/10.1371/journal.pgen.1002230openalex-snapshot
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
inferredcites →https://doi.org/10.1371/journal.pgen.1003669openalex-snapshot
Genome Wide Association Identifies Novel Loci Involved in Fungal Communication
inferredcites →https://doi.org/10.1371/journal.pgen.1004779openalex-snapshot
Genetic Variation in the Nuclear and Organellar Genomes Modulates Stochastic Variation in the Metabolome, Growth, and Defense
inferredcites →https://doi.org/10.1371/journal.pgen.1005789openalex-snapshot
The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics
inferredcites →https://doi.org/10.1371/journal.pone.0047840openalex-snapshot
Natural Variation in the VELVET Gene bcvel1 Affects Virulence and Light-Dependent Differentiation in Botrytis cinerea
inferredcites →https://doi.org/10.1371/journal.pone.0053525openalex-snapshot
A Genome-Wide Association Study Identifies Genomic Regions for Virulence in the Non-Model Organism Heterobasidion annosum s.s
inferredcites →https://doi.org/10.1534/g3.112.003152openalex-snapshot
Mitochondrial Genome Evolution in a Single Protoploid Yeast Species
inferredcites →https://doi.org/10.1534/g3.114.015289openalex-snapshot
Quantitative Trait Locus Mapping of Melanization in the Plant Pathogenic FungusZymoseptoria tritici
inferredcites →https://doi.org/10.1534/genetics.107.080101openalex-snapshot
Efficient Control of Population Structure in Model Organism Association Mapping
inferredcites →https://doi.org/10.1534/genetics.108.091439openalex-snapshot
Complex Genetics Control Natural Variation inArabidopsis thalianaResistance toBotrytis cinerea
inferredcites →https://doi.org/10.1534/genetics.112.146720openalex-snapshot
A Novel Generalized Ridge Regression Method for Quantitative Genetics
inferredcites →https://doi.org/10.1534/genetics.114.168575openalex-snapshot
Mitochondrial-Nuclear Epistasis Contributes to Phenotypic Variation and Coadaptation in Natural Isolates of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.2307/3001968openalex-snapshot
Individual Comparisons by Ranking Methods
inferredcites →https://doi.org/10.3389/fmicb.2015.00996openalex-snapshot
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity
inferredcites →https://doi.org/10.3852/mycologia.97.2.485openalex-snapshot
Differences in the initial events of infection of Botrytis cinerea strains isolated from tomato and grape
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.4172/2157-7471.1000176openalex-snapshot
Evaluation of Detached Leaf Assay for Assessing Leaf Rust (Puccinia triticina Eriks.) Resistance in Wheat
inferredcites →https://doi.org/10.6084/m9.figshare.1425030openalex-snapshot
JVarkit: java-based utilities for Bioinformatics
inferredcites →https://doi.org/10.7717/peerj.1668openalex-snapshot
Monogenean anchor morphometry: systematic value, phylogenetic signal, and evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/aps3.70049openalex-snapshot
SkelPy: A graphic user interface–based approach for skeletonizing fungal networks
inferred← citeshttps://doi.org/10.1007/978-1-0716-5551-1_3openalex-snapshot
In Vitro Sexual Reproduction of Botrytis cinerea
inferred← citeshttps://doi.org/10.1016/j.fbio.2025.106479openalex-snapshot
The whole genome and transcriptome analysis revealing the low virulence of Botrytis prunorum in grape berries
inferred← citeshttps://doi.org/10.1073/pnas.2521414123openalex-snapshot
Combined generalist and host-specific transcriptional strategies enable host generalism in the fungal pathogen Botrytis cinerea
inferred← citeshttps://doi.org/10.1073/pnas.2601719123openalex-snapshot
A multiplant transcriptomic atlas reveals conserved and lineage-specific defense architectures in response to Botrytis cinerea
inferred← citeshttps://doi.org/10.1093/g3journal/jkab175openalex-snapshot
Quantitative interactions: the disease outcome of Botrytis cinerea across the plant kingdom
inferred← citeshttps://doi.org/10.1093/g3journal/jkag125openalex-snapshot
Host–Botrytis co-transcriptomics reveals finely tuned interactions with closely related legumes
inferred← citeshttps://doi.org/10.1093/gbe/evab209openalex-snapshot
Genome-Wide Association and Selective Sweep Studies Reveal the Complex Genetic Architecture of DMI Fungicide Resistance in Cercospora beticola
inferred← citeshttps://doi.org/10.1093/gbe/evaf241openalex-snapshot
Genomic Insights into Historical Adaptation of Three Key Fungal Plant Pathogens
inferred← citeshttps://doi.org/10.1093/genetics/iyad099openalex-snapshot
Polygenic pathogen networks influence transcriptional plasticity in the Arabidopsis–Botrytis pathosystem
inferred← citeshttps://doi.org/10.1093/genetics/iyaf079openalex-snapshot
Polygenic strategies for host-specific and general virulence of Botrytis cinerea across diverse eudicot hosts
inferred← citeshttps://doi.org/10.1094/phyto-07-20-0302-fiopenalex-snapshot
Population Genomics Reveals Molecular Determinants of Specialization to Tomato in the Polyphagous Fungal Pathogen Botrytis cinerea in France
inferred← citeshttps://doi.org/10.1101/2020.09.26.315010openalex-snapshot
Tissue-specific accumulation profiles of phorbol esters in Jatropha curcas and gene induction in response to abiotic and biotic stresses
inferred← citeshttps://doi.org/10.1101/2023.03.16.533032openalex-snapshot
Polygenic pathogen networks control of host and pathogen transcriptional plasticity in the Arabidopsis-Botrytis pathosystem
inferred← citeshttps://doi.org/10.1101/2024.07.02.600549openalex-snapshot
Cryptic recombination and transposition drive structural variation to shape genomic plasticity and life history traits in a host generalist fungal plant pathogen
inferred← citeshttps://doi.org/10.1101/2025.09.11.675604openalex-snapshot
HyPhy: a skeletonization-based approach for fungal network analysis
inferred← citeshttps://doi.org/10.1105/tpc.18.00857openalex-snapshot
Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation
inferred← citeshttps://doi.org/10.1111/mpp.13404openalex-snapshot
Genetic and molecular landscapes of the generalist phytopathogen Botrytis cinerea
inferred← citeshttps://doi.org/10.1186/s12915-025-02179-xopenalex-snapshot
Recombination and transposition drive genomic structural variation potentially impacting life history traits in a host-generalist fungal plant pathogen
inferred← citeshttps://doi.org/10.1534/genetics.120.303070openalex-snapshot
Pathogen Genetic Control of Transcriptome Variation in the Arabidopsis thaliana – Botrytis cinerea Pathosystem
inferred← citeshttps://doi.org/10.3389/fpls.2021.663870openalex-snapshot
A Major Effect Gene Controlling Development and Pathogenicity in Botrytis cinerea Identified Through Genetic Analysis of Natural Mycelial Non-pathogenic Isolates
inferred← citeshttps://doi.org/10.3390/ijms26083481openalex-snapshot
Genetic and Genomic Analysis Identifies bcltf1 as the Transcription Factor Coding Gene Mutated in Field Isolate Bc116, Deficient in Light Responses, Differentiation and Pathogenicity in Botrytis cinerea
inferred← citeshttps://doi.org/10.3390/seeds3030024openalex-snapshot
Tissue-Specific Accumulation Profiles of Phorbol Esters in Response to Abiotic and Biotic Stresses in Jatropha curcas
inferred← citeshttps://doi.org/10.64898/2026.04.05.716576openalex-snapshot
Strategy Sets the Scene: Genetic architecture of linalool resistance in Botrytis cinerea
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