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Fast and accurate large multiple sequence alignments using root-to-leave regressive computation

https://doi.org/10.1101/490235
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf02257378openalex-snapshot
The alignment of sets of sequences and the construction of phyletic trees: An integrated method
inferredcites →https://doi.org/10.1038/nature11510openalex-snapshot
Epistasis as the primary factor in molecular evolution
inferredcites →https://doi.org/10.1073/pnas.1615068114openalex-snapshot
Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis
inferredcites →https://doi.org/10.1080/10635150600981604openalex-snapshot
Phylogenetic Diversity within Seconds
inferredcites →https://doi.org/10.1089/cmb.2014.0156openalex-snapshot
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences
inferredcites →https://doi.org/10.1093/bib/bbv099openalex-snapshot
Multiple sequence alignment modeling: methods and applications
inferredcites →https://doi.org/10.1093/bioinformatics/btl592openalex-snapshot
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btw412openalex-snapshot
Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkh027openalex-snapshot
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database
inferredcites →https://doi.org/10.1093/nar/gki198openalex-snapshot
MAFFT version 5: improvement in accuracy of multiple sequence alignment
inferredcites →https://doi.org/10.1126/science.1171243openalex-snapshot
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
inferredcites →https://doi.org/10.1126/science.1197891openalex-snapshot
On the Future of Genomic Data
inferredcites →https://doi.org/10.1126/science.1250463openalex-snapshot
Statistical binning enables an accurate coalescent-based estimation of the avian tree
inferredcites →https://doi.org/10.1186/1748-7188-5-21openalex-snapshot
Sequence embedding for fast construction of guide trees for multiple sequence alignment
inferredcites →https://doi.org/10.1186/s13059-015-0688-zopenalex-snapshot
Ultra-large alignments using phylogeny-aware profiles

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/nargab/lqz015openalex-snapshot
ELECTOR: evaluator for long reads correction methods
inferred← citeshttps://doi.org/10.1186/s12863-022-01045-xopenalex-snapshot
Developing a bioinformatics pipeline for comparative protein classification analysis
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