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A generic multi-level stochastic modelling framework in computational epidemiology

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model
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A Multi-Level Multi-Agent Simulation Framework in Animal Epidemiology
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Towards Virtual Epidemiology: An Agent-Based Approach to the Modeling of H5N1 Propagation and Persistence in North-Vietnam
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IRM4MLS: The Influence Reaction Model for Multi-Level Simulation
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Coxiella burnetii: Recent Advances and New Perspectives in Research of the Q Fever Bacterium
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Epidemic Q Fever in Humans in the Netherlands
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An analytical model for air pollutant transport and deposition from a point source
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Preface
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A standard protocol for describing individual-based and agent-based models
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A workflow for software development within computational epidemiology
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Modelling the effect of heterogeneity of shedding on the within herd Coxiella burnetii spread and identification of key parameters by sensitivity analysis
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Multi-level agent-based simulations: Four design patterns
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The implications of network structure for epidemic dynamics
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(Meta)population dynamics of infectious diseases
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Exact stochastic simulation of coupled chemical reactions
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Computational science: ...Error
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Strategies for containing an emerging influenza pandemic in Southeast Asia
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The Systems Biology Graphical Notation
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Coxiella burnetii shedding by dairy cows
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Modeling targeted layered containment of an influenza pandemic in the United States
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Individual identity and movement networks for disease metapopulations
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Reproducible research can still be wrong: Adopting a prevention approach
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DIOGEN, a multi-level oriented model for cartographic generalization
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Nonlinear Dynamics and Evolution Equations
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Disease spread in metapopulations
inferredcites →https://doi.org/10.1093/aje/kwj093openalex-snapshot
Reproducible Epidemiologic Research
inferredcites →https://doi.org/10.1093/aje/kwu274openalex-snapshot
Formalizing the Role of Agent-Based Modeling in Causal Inference and Epidemiology
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On the formalization of multi-scale and multi-science processes for integrative biology
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A contribution to the mathematical theory of epidemics
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Spread of Q fever within dairy cattle herds: key parameters inferred using a Bayesian approach
inferredcites →https://doi.org/10.1109/rivf.2010.5633421openalex-snapshot
O.D.D.: A Promising but Incomplete Formalism for Individual-Based Model Specification
inferredcites →https://doi.org/10.1109/wsc.2007.4419767openalex-snapshot
A Hybrid Epidemic Model: Combining The Advantages Of Agent-Based And Equation-Based Approaches
inferredcites →https://doi.org/10.1111/1365-2745.12025openalex-snapshot
Identification of 100 fundamental ecological questions
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Modeling Infectious Diseases in Humans and Animals by KEELING, M. J. and ROHANI, P.
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The Mathematics of Atmospheric Dispersion Modeling
inferredcites →https://doi.org/10.1137/s0036144500371907openalex-snapshot
The Mathematics of Infectious Diseases
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When and how to develop domain-specific languages
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A Distributed Platform for Global-Scale Agent-Based Models of Disease Transmission
inferredcites →https://doi.org/10.1145/2892664.2892699openalex-snapshot
Separation of concerns in epidemiological modelling
inferredcites →https://doi.org/10.1145/2961028.2961034openalex-snapshot
A fully GIS-integrated simulation approach for analyzing the spread of epidemics in urban areas
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Predicting fadeout versus persistence of paratuberculosis in a dairy cattle herd for management and control purposes: a modelling study
inferredcites →https://doi.org/10.1186/1471-2105-9-435openalex-snapshot
Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission
inferredcites →https://doi.org/10.1186/1471-2334-10-190openalex-snapshot
Comparing large-scale computational approaches to epidemic modeling: Agent-based versus structured metapopulation models
inferredcites →https://doi.org/10.1186/1471-2334-11-37openalex-snapshot
The GLEaMviz computational tool, a publicly available software to explore realistic epidemic spreading scenarios at the global scale
inferredcites →https://doi.org/10.1186/s12859-016-0903-2openalex-snapshot
Broadwick: a framework for computational epidemiology
inferredcites →https://doi.org/10.1186/s13567-015-0195-yopenalex-snapshot
Agent-based model for Johne’s disease dynamics in a dairy herd
inferredcites →https://doi.org/10.1186/s13567-015-0247-3openalex-snapshot
Modelling of paratuberculosis spread between dairy cattle farms at a regional scale
inferredcites →https://doi.org/10.1186/s13567-016-0330-4openalex-snapshot
Spread of Coxiella burnetii between dairy cattle herds in an enzootic region: modelling contributions of airborne transmission and trade
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Time series analysis via mechanistic models
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Individual-based models in ecology after four decades
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Ten Simple Rules for Reproducible Computational Research
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Towards a Characterization of Behavior-Disease Models
inferredcites →https://doi.org/10.2307/j.ctvcm4gk0openalex-snapshot
Modeling Infectious Diseases in Humans and Animals
inferredcites →https://doi.org/10.24963/ijcai.2017/53openalex-snapshot
Enhancing Sustainability of Complex Epidemiological Models through a Generic Multilevel Agent-based Approach
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A Multi-level Model for Multi-agent based Simulation
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An Interaction-Oriented Model for Multi-Scale Simulation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/563791openalex-snapshot
EMULSION: transparent and flexible multiscale stochastic models in epidemiology
inferred← citeshttps://doi.org/10.65112/tcmis.10028openalex-snapshot
A selective review of modern stochastic modeling: SDE/SPDE numerics, data-driven identification, and generative methods with applications in biomathematics
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