On the public citation graph

Optimising multi-batch TMT analysis to mitigate inflation of missing values, false positives and diminished inter batch accuracy

https://doi.org/10.1101/497396
0 signed · 36 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/s10928-015-9432-2openalex-snapshot
Abstracts Accepted for American Conference on Pharmacometrics 2015 (ACoP6)
inferredcites →https://doi.org/10.1007/s13361-016-1434-9openalex-snapshot
A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments
inferredcites →https://doi.org/10.1016/j.cels.2017.05.009openalex-snapshot
An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes
inferredcites →https://doi.org/10.1016/j.chroma.2014.12.035openalex-snapshot
The role of protein and peptide separation before mass spectrometry analysis in clinical proteomics
inferredcites →https://doi.org/10.1021/ac0262560openalex-snapshot
Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS
inferredcites →https://doi.org/10.1021/ac030267ropenalex-snapshot
Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS
inferredcites →https://doi.org/10.1021/ac502040vopenalex-snapshot
MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00802openalex-snapshot
Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00981openalex-snapshot
Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00016openalex-snapshot
Proteome-Wide Evaluation of Two Common Protein Quantification Methods
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00611openalex-snapshot
Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument Platforms
inferredcites →https://doi.org/10.1021/pr501138hopenalex-snapshot
Review, Evaluation, and Discussion of the Challenges of Missing Value Imputation for Mass Spectrometry-Based Label-Free Global Proteomics
inferredcites →https://doi.org/10.1038/msb.2011.82openalex-snapshot
The quantitative proteome of a human cell line
inferredcites →https://doi.org/10.1038/nature22403openalex-snapshot
Common genetic variation drives molecular heterogeneity in human iPSCs
inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
inferredcites →https://doi.org/10.1038/nbt.2839openalex-snapshot
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
inferredcites →https://doi.org/10.1038/ni.3314openalex-snapshot
The cytotoxic T cell proteome and its shaping by the kinase mTOR
inferredcites →https://doi.org/10.1038/nrm3970openalex-snapshot
Multidimensional proteomics for cell biology
inferredcites →https://doi.org/10.1038/s41467-018-06353-4openalex-snapshot
Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline
inferredcites →https://doi.org/10.1038/s41592-018-0003-5openalex-snapshot
BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes
inferredcites →https://doi.org/10.1038/s41592-018-0037-8openalex-snapshot
EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification
inferredcites →https://doi.org/10.1074/mcp.m113.037309openalex-snapshot
A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards
inferredcites →https://doi.org/10.1074/mcp.m400129-mcp200openalex-snapshot
Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents
inferredcites →https://doi.org/10.1074/mcp.m700165-mcp200openalex-snapshot
The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 Study
inferredcites →https://doi.org/10.1091/mbc.e15-07-0507openalex-snapshot
Reproducible quantitative proteotype data matrices for systems biology
inferredcites →https://doi.org/10.1093/nar/gkv1145openalex-snapshot
2016 update of the PRIDE database and its related tools
inferredcites →https://doi.org/10.1101/439216openalex-snapshot
Population-scale proteome variation in human induced pluripotent stem cells
inferredcites →https://doi.org/10.1101/469916openalex-snapshot
The iPSC proteomic compendium
inferredcites →https://doi.org/10.1111/j.1467-985x.2010.00676_9.xopenalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.12688/f1000research.7042.1openalex-snapshot
Technical advances in proteomics: new developments in data-independent acquisition
inferredcites →https://doi.org/10.15252/embj.201899559openalex-snapshot
Phosphoproteomic screening identifies physiological substrates of the CDKL5 kinase
inferredcites →https://doi.org/10.1641/0006-3568(2001)051[0341:lndats]2.0.co;2openalex-snapshot
Log-normal Distributions across the Sciences: Keys and Clues
inferredcites →https://doi.org/10.2307/2532051openalex-snapshot
A Concordance Correlation Coefficient to Evaluate Reproducibility
inferredcites →https://doi.org/10.7554/elife.04534openalex-snapshot
Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells
inferredcites →https://doi.org/10.7554/elife.57390openalex-snapshot
Population-scale proteome variation in human induced pluripotent stem cells
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.