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Access COI barcode efficiently using high throughput Single-End 400 bp sequencing

https://doi.org/10.1101/498618
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00338-007-0248-4openalex-snapshot
DNA barcoding as a tool for coral reef conservation
inferredcites →https://doi.org/10.1007/s10531-012-0306-2openalex-snapshot
A critical review on the utility of DNA barcoding in biodiversity conservation
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.019openalex-snapshot
Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
inferredcites →https://doi.org/10.1016/j.cell.2008.02.028openalex-snapshot
Next-Generation Sequencing: The Race Is On
inferredcites →https://doi.org/10.1016/j.tree.2008.09.011openalex-snapshot
DNA barcoding for ecologists
inferredcites →https://doi.org/10.1016/j.tree.2014.04.003openalex-snapshot
Environmental DNA for wildlife biology and biodiversity monitoring
inferredcites →https://doi.org/10.1038/srep09687openalex-snapshot
Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
inferredcites →https://doi.org/10.1038/srep41948openalex-snapshot
High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01471.xopenalex-snapshot
Molecular identification of prey in predator diets
inferredcites →https://doi.org/10.1046/j.1523-1739.1995.09061528.xopenalex-snapshot
Effects of Human Activity on Global Extinction Risk
inferredcites →https://doi.org/10.1080/10635150600960079openalex-snapshot
Who Will Actually Use DNA Barcoding and What Will It Cost?
inferredcites →https://doi.org/10.1093/bfgp/elr035openalex-snapshot
Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/gigascience/giw015openalex-snapshot
Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
inferredcites →https://doi.org/10.1093/gigascience/gix104openalex-snapshot
Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1111/1755-0998.12138openalex-snapshot
Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all‐taxa biotic surveys
inferredcites →https://doi.org/10.1111/2041-210x.12120openalex-snapshot
SOAP B arcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons
inferredcites →https://doi.org/10.1111/2041-210x.12416openalex-snapshot
High‐throughput monitoring of wild bee diversity and abundance via mitogenomics
inferredcites →https://doi.org/10.1111/2041-210x.12647openalex-snapshot
A cost‐efficient and simple protocol to enrich prey DNA from extractions of predatory arthropods for large‐scale gut content analysis by Illumina sequencing
inferredcites →https://doi.org/10.1111/cla.12115openalex-snapshot
$1 DNA barcodes for reconstructing complex phenomes and finding rare species in specimen‐rich samples
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05505.xopenalex-snapshot
The future of environmental DNA in ecology
inferredcites →https://doi.org/10.1111/j.1471-8286.2006.01428.xopenalex-snapshot
An inexpensive, automation‐friendly protocol for recovering high‐quality DNA
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01678.xopenalex-snapshot
bold : The Barcode of Life Data System (http://www.barcodinglife.org)
inferredcites →https://doi.org/10.1126/science.307.5712.1037openalex-snapshot
Will DNA Bar Codes Breathe Life Into Classification?
inferredcites →https://doi.org/10.1146/annurev-ecolsys-120213-091917openalex-snapshot
Biodiversity and Ecosystem Functioning
inferredcites →https://doi.org/10.1186/s12864-018-4611-3openalex-snapshot
A Sequel to Sanger: amplicon sequencing that scales
inferredcites →https://doi.org/10.1371/journal.pgen.1002657openalex-snapshot
Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns
inferredcites →https://doi.org/10.1371/journal.pone.0013102openalex-snapshot
Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals
inferredcites →https://doi.org/10.1371/journal.pone.0028381openalex-snapshot
Barcoding and Border Biosecurity: Identifying Cyprinid Fishes in the Aquarium Trade
inferredcites →https://doi.org/10.1371/journal.pone.0188837openalex-snapshot
DNA barcoding, ecology and geography of the cryptic species of Aneura pinguis and their relationships with Aneura maxima and Aneura mirabilis (Metzgeriales, Marchantiophyta)
inferredcites →https://doi.org/10.1890/070064openalex-snapshot
Assessing the global threat of invasive species to marine biodiversity
inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot
Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10682-020-10072-yopenalex-snapshot
Using full-length metabarcoding and DNA barcoding to infer community assembly for speciose taxonomic groups: a case study
inferred← citeshttps://doi.org/10.1016/j.ab.2022.114871openalex-snapshot
A megadiverse naïve library derived from numerous camelids for efficient and rapid development of VHH antibodies
inferred← citeshttps://doi.org/10.1038/s41396-020-0671-xopenalex-snapshot
Diverse coral reef invertebrates exhibit patterns of phylosymbiosis
inferred← citeshttps://doi.org/10.1093/sysbio/syaa014openalex-snapshot
Longer is Not Always Better: Optimizing Barcode Length for Large-Scale Species Discovery and Identification
inferred← citeshttps://doi.org/10.1101/594952openalex-snapshot
Mini-barcodes are equally useful for species identification and more suitable for large-scale species discovery in Metazoa than full-length barcodes
inferred← citeshttps://doi.org/10.17520/biods.2022441openalex-snapshot
Application of genomics technology in biodiversity conservation research
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