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A role for gut microbiota in m6A epitranscriptomic mRNA modifications in different host tissues

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201500151openalex-snapshot

Know your neighbor: Microbiota and host epithelial cells interact locally to control intestinal function and physiology

inferredcites →https://doi.org/10.1002/rmv.1983openalex-snapshot

RNA epitranscriptomics: Regulation of infection of RNA and DNA viruses by N 6 ‐methyladenosine (m 6 A)

inferredcites →https://doi.org/10.1007/s00335-015-9583-xopenalex-snapshot

Creating reference gene annotation for the mouse C57BL6/J genome assembly

inferredcites →https://doi.org/10.1016/0076-6879(90)93452-qopenalex-snapshot

[44] Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry

inferredcites →https://doi.org/10.1016/j.cbpa.2017.10.008openalex-snapshot

Epitranscriptomics: regulation of mRNA metabolism through modifications

inferredcites →https://doi.org/10.1016/j.cell.2012.05.003openalex-snapshot

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons

inferredcites →https://doi.org/10.1016/j.cell.2013.10.026openalex-snapshot

RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock

inferredcites →https://doi.org/10.1016/j.cell.2013.10.047openalex-snapshot

High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis

inferredcites →https://doi.org/10.1016/j.cell.2015.10.012openalex-snapshot

5′ UTR m6A Promotes Cap-Independent Translation

inferredcites →https://doi.org/10.1016/j.cell.2016.05.041openalex-snapshot

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

inferredcites →https://doi.org/10.1016/j.cell.2017.05.003openalex-snapshot

The U6 snRNA m 6 A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention

inferredcites →https://doi.org/10.1016/j.cell.2017.09.003openalex-snapshot

Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation

inferredcites →https://doi.org/10.1016/j.celrep.2014.05.048openalex-snapshot

Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

inferredcites →https://doi.org/10.1016/j.celrep.2017.11.092openalex-snapshot

S-Adenosylmethionine Synthesis Is Regulated by Selective N6-Adenosine Methylation and mRNA Degradation Involving METTL16 and YTHDC1

inferredcites →https://doi.org/10.1016/j.chom.2016.09.015openalex-snapshot

N6 -Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection

inferredcites →https://doi.org/10.1016/j.chom.2016.10.002openalex-snapshot

Dynamics of Human and Viral RNA Methylation during Zika Virus Infection

inferredcites →https://doi.org/10.1016/j.chom.2018.05.003openalex-snapshot

Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease

inferredcites →https://doi.org/10.1016/j.mib.2017.12.011openalex-snapshot

Sphingolipids in host–microbial interactions

inferredcites →https://doi.org/10.1016/j.micpath.2016.02.005openalex-snapshot

Akkermansia muciniphila and its role in regulating host functions

inferredcites →https://doi.org/10.1016/j.molcel.2016.10.025openalex-snapshot

Diet-Microbiota Interactions Mediate Global Epigenetic Programming in Multiple Host Tissues

inferredcites →https://doi.org/10.1016/j.ygeno.2013.07.011openalex-snapshot

AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1016/s0076-6879(07)25009-8openalex-snapshot

Mass Spectrometric Identification and Characterization of RNA‐Modifying Enzymes

inferredcites →https://doi.org/10.1038/nature07848openalex-snapshot

Inactivation of the Fto gene protects from obesity

inferredcites →https://doi.org/10.1038/nature11112openalex-snapshot

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

inferredcites →https://doi.org/10.1038/nature23450openalex-snapshot

m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways

inferredcites →https://doi.org/10.1038/nchembio.1432openalex-snapshot

A METTL3–METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation

inferredcites →https://doi.org/10.1038/nm.4185openalex-snapshot

Signals from the gut microbiota to distant organs in physiology and disease

inferredcites →https://doi.org/10.1038/nmicrobiol.2016.11openalex-snapshot

Dynamics of the human and viral m6A RNA methylomes during HIV-1 infection of T cells

inferredcites →https://doi.org/10.1038/nprot.2012.148openalex-snapshot

Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing and massively parallel sequencing

inferredcites →https://doi.org/10.1073/pnas.0407076101openalex-snapshot

The gut microbiota as an environmental factor that regulates fat storage

inferredcites →https://doi.org/10.1073/pnas.1523899113openalex-snapshot

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection

inferredcites →https://doi.org/10.1084/jem.20171965openalex-snapshot

Bile acids in glucose metabolism in health and disease

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-snapshot

MultiQC: summarize analysis results for multiple tools and samples in a single report

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot

limma powers differential expression analyses for RNA-sequencing and microarray studies

inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

inferredcites →https://doi.org/10.1093/nar/gkx1080openalex-snapshot

MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1126/science.1141634openalex-snapshot

A Common Variant in the FTO Gene Is Associated with Body Mass Index and Predisposes to Childhood and Adult Obesity

inferredcites →https://doi.org/10.1126/science.1223813openalex-snapshot

Host-Gut Microbiota Metabolic Interactions

inferredcites →https://doi.org/10.1126/science.1261417openalex-snapshot

m 6 A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation

inferredcites →https://doi.org/10.1128/aem.01477-07openalex-snapshot

Intestinal Integrity and Akkermansia muciniphila , a Mucin-Degrading Member of the Intestinal Microbiota Present in Infants, Adults, and the Elderly

inferredcites →https://doi.org/10.1128/msystems.00107-17openalex-snapshot

Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota

inferredcites →https://doi.org/10.1186/1471-2105-14-128openalex-snapshot

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot

A scaling normalization method for differential expression analysis of RNA-seq data

inferredcites →https://doi.org/10.1186/gb-2014-15-2-r29openalex-snapshot

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

inferredcites →https://doi.org/10.1242/dev.136556openalex-snapshot

Post-transcriptional modifications in development and stem cells

inferredcites →https://doi.org/10.1371/journal.pgen.1000599openalex-snapshot

A Mouse Model for the Metabolic Effects of the Human Fat Mass and Obesity Associated FTO Gene

inferredcites →https://doi.org/10.1371/journal.pone.0017996openalex-snapshot

Depletion of Murine Intestinal Microbiota: Effects on Gut Mucosa and Epithelial Gene Expression

inferredcites →https://doi.org/10.15252/embr.201744940openalex-snapshot

Human METTL16 is a N6‐methyladenosine (m6A) methyltransferase that targets pre‐mRNAs and various non‐coding RNAs

inferredcites →https://doi.org/10.15252/msb.20156487openalex-snapshot

The gut microbiota modulates host amino acid and glutathione metabolism in mice

inferredcites →https://doi.org/10.7554/elife.15528openalex-snapshot

N6-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00424-025-03072-wopenalex-snapshot

Microbiota, mitochondria, and epigenetics in health and disease: converging pathways to solve the puzzle

inferred← citeshttps://doi.org/10.1016/j.dci.2022.104434openalex-snapshot

Global N6-methyladenosine methylation analysis reveals the positive correlation between m6A modification and mRNA abundance during Apostichopus japonicus disease development

inferred← citeshttps://doi.org/10.1016/j.jes.2026.105802openalex-snapshot

RNA-m6A methylation and gut microbiota crosstalk mediate TCS-induced glucose metabolism abnormalities in zebrafish

inferred← citeshttps://doi.org/10.1111/obr.12942openalex-snapshot

Emerging role of m6A RNA methylation in nutritional physiology and metabolism

inferred← citeshttps://doi.org/10.1515/reveh-2025-0057openalex-snapshot

m6A methylation – a new target of metabolic diseases induced by environmental pollutants

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