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Genomic perspectives on adaptation and conservation in the endangered long-tailed goral ( Naemorhedus caudatus )

https://doi.org/10.1101/505156
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Intestinal helminth infection induces highly functional resident memory CD4+ T cells in mice
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A Cladistic Analysis of Mitochondrial Ribosomal DNA from the Bovidae
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SPLUNC1/BPIFA1 Contributes to Pulmonary Host Defense against Klebsiella pneumoniae Respiratory Infection
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Extracellular Vesicles from a Helminth Parasite Suppress Macrophage Activation and Constitute an Effective Vaccine for Protective Immunity
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Impaired resistance in early secondary Nippostrongylus brasiliensis infections in mice with defective eosinophilopoeisis
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Mast Cells Are Crucial for Induction of Group 2 Innate Lymphoid Cells and Clearance of Helminth Infections
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Statistical methods for detecting molecular adaptation
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Phylogenetic relationships of Chinese antelopes (sub family Antilopinae) based on mitochondrial Ribosomal RNA gene sequences
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Regulation of skeletal muscle mass in mice by a new TGF-p superfamily member
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IL‐5‐overexpressing mice exhibit eosinophilia and altered wound healing through mechanisms involving prolonged inflammation
inferredcites →https://doi.org/10.1038/icb.2011.69openalex-snapshot
Protection against Nippostrongylus brasiliensis infection in mice is independent of GM‐CSF
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Inference of human population history from individual whole-genome sequences
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Epidermal Notch1 recruits RORγ+ group 3 innate lymphoid cells to orchestrate normal skin repair
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A deletion in the bovine myostatin gene causes the double–muscled phenotype in cattle
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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Type 2 immunity and wound healing: evolutionary refinement of adaptive immunity by helminths
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Regulation of macrophage development and function in peripheral tissues
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Generation and evaluation of Myostatin knock-out rabbits and goats using CRISPR/Cas9 system
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Regulation of primary Strongyloides ratti infections in mice: a role for interleukin‐5
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Myostatin Mutation Associated with Gross Muscle Hypertrophy in a Child
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An algorithm for progressive multiple alignment of sequences with insertions
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Contribution of IL-33–activated type II innate lymphoid cells to pulmonary eosinophilia in intestinal nematode-infected mice
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Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change
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Characterization of the Ligand Binding Functionality of the Extracellular Domain of Activin Receptor Type IIB
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The Myostatin Propeptide and the Follistatin-related Gene Are Inhibitory Binding Proteins of Myostatin in Normal Serum
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Risks of Population Extinction from Demographic and Environmental Stochasticity and Random Catastrophes
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Rapidly Evolving Genes and Genetic Systems
inferredcites →https://doi.org/10.1093/bioinformatics/btl505openalex-snapshot
TimeTree: a public knowledge-base of divergence times among organisms
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu097openalex-snapshot
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
inferredcites →https://doi.org/10.1093/bioinformatics/btv195openalex-snapshot
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
inferredcites →https://doi.org/10.1093/molbev/msi237openalex-snapshot
Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot
KAAS: an automatic genome annotation and pathway reconstruction server
inferredcites →https://doi.org/10.1093/nar/gkt450openalex-snapshot
BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations
inferredcites →https://doi.org/10.1093/nar/gku340openalex-snapshot
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
inferredcites →https://doi.org/10.1098/rspb.2012.0683openalex-snapshot
Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.7.9.910openalex-snapshot
Mutations in myostatin ( GDF8 ) in Double-Muscled Belgian Blue and Piedmontese Cattle
inferredcites →https://doi.org/10.1110/ps.073068407openalex-snapshot
Crystal structure of activin receptor type IIB kinase domain from human at 2.0 Å resolution
inferredcites →https://doi.org/10.1111/j.1365-3024.1993.tb00619.xopenalex-snapshot
Ablation of eosinophils with anti‐IL‐5 antibody enhances the survival of intracranial worms of Angiostrongylus cantonensis in the mouse
inferredcites →https://doi.org/10.1111/j.1439-0469.2004.00290.xopenalex-snapshot
Molecular phylogeny of caprines (Bovidae, Antilopinae): the question of their origin and diversification during the Miocene
inferredcites →https://doi.org/10.1111/j.1469-7998.1996.tb05307.xopenalex-snapshot
On habitat selection by the goral Nemorhaedus goral bedfordi (Bovidae, Artiodactyla)
inferredcites →https://doi.org/10.1128/iai.67.10.5315-5323.1999openalex-snapshot
Trapping and Immobilization ofNippostrongylus brasiliensisLarvae at the Site of Inoculation in Primary Infections of Interleukin-5 Transgenic Mice
inferredcites →https://doi.org/10.1128/iai.70.2.427-433.2002openalex-snapshot
Immunology of Parasitic Helminth Infections
inferredcites →https://doi.org/10.1146/annurev.cellbio.20.012103.135836openalex-snapshot
REGULATION OF MUSCLE MASS BY MYOSTATIN
inferredcites →https://doi.org/10.1152/physrev.00031.2002openalex-snapshot
Secretory Granule Exocytosis
inferredcites →https://doi.org/10.1155/2015/652035openalex-snapshot
Leukocytes: The Double‐Edged Sword in Fibrosis
inferredcites →https://doi.org/10.1182/blood-2012-07-442640openalex-snapshot
The biology of nematode- and IL4Rα-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics
inferredcites →https://doi.org/10.1186/1471-2148-10-223openalex-snapshot
Diversifying selection and functional analysis of interleukin-4 suggests antagonism-driven evolution at receptor-binding interfaces
inferredcites →https://doi.org/10.1186/1471-2148-13-166openalex-snapshot
A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics
inferredcites →https://doi.org/10.1186/jbiol166openalex-snapshot
Parasite immunomodulation and polymorphisms of the immune system
inferredcites →https://doi.org/10.1266/ggs.90.31openalex-snapshot
Genetic diversity and population structure of the long-tailed goral, Naemorhedus caudatus, in South Korea
inferredcites →https://doi.org/10.1371/journal.pone.0019580openalex-snapshot
Assessing the Role of CD103 in Immunity to an Intestinal Helminth Parasite
inferredcites →https://doi.org/10.1371/journal.pone.0163751openalex-snapshot
IL-33-Induced Cytokine Secretion and Survival of Mouse Eosinophils Is Promoted by Autocrine GM-CSF
inferredcites →https://doi.org/10.1515/mammalia-2015-0024openalex-snapshot
Habitat altitude and home range of the endangered long-tailed goral (Naemorhedus caudatus): seasonal and monthly home range and altitude change
inferredcites →https://doi.org/10.2307/3545512openalex-snapshot
Tropical Forest Biodiversity: Distributional Patterns and Their Conservational Significance
inferredcites →https://doi.org/10.3109/19401736.2014.936418openalex-snapshot
The complete mitochondrial genome of Chinese tibetan goat ( Capra hircus )
inferredcites →https://doi.org/10.56021/9781421400938openalex-snapshot
Ungulate Taxonomy
inferredcites →https://doi.org/10.5860/choice.36-0964openalex-snapshot
Wildlife of the Tibetan steppe
inferredcites →https://doi.org/10.7325/galemys.2010.ne.a22openalex-snapshot
GIS-based range and long-term monitoring of Amur goral in the russian far east

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11626/kjeb.2025.43.1.028openalex-snapshot
Phylogenetic status and population genetic structure of the long-tailed goral, Naemorhedus caudatus inhabiting the Seoraksan National Park in Korea
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