On the public citation graph

Ion counting demonstrates a high electrostatic potential of the nucleosome

https://doi.org/10.1101/514471
0 signed · 76 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9780470286364.ch6openalex-snapshot
Interactions of Histones with DNA: Nucleosome Assembly, Stability, Dynamics, and Higher Order Structure
inferredcites →https://doi.org/10.1002/bip.10353openalex-snapshot
A thermodynamic framework for the magnesium‐dependent folding of RNA
inferredcites →https://doi.org/10.1002/bip.20627openalex-snapshot
Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity
inferredcites →https://doi.org/10.1002/bip.360280506openalex-snapshot
The electrostatic potential of B‐DNA
inferredcites →https://doi.org/10.1002/bip.360360210openalex-snapshot
Polyelectrolyte electrostatics: Salt dependence, entropic, and enthalpic contributions to free energy in the nonlinear Poisson–Boltzmann model
inferredcites →https://doi.org/10.1006/jmbi.1994.1286openalex-snapshot
Salt Effects on Protein-DNA Interactions
inferredcites →https://doi.org/10.1006/jmbi.1999.3334openalex-snapshot
The interpretation of Mg2+ binding isotherms for nucleic acids using Poisson-Boltzmann theory
inferredcites →https://doi.org/10.1006/jmbi.2002.5422openalex-snapshot
The linkage between magnesium binding and RNA folding 1 1Edited by B. Honig
inferredcites →https://doi.org/10.1007/978-1-61779-477-3_20openalex-snapshot
Analysis of Changes in Nucleosome Conformation Using Fluorescence Resonance Energy Transfer
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/0301-4622(77)80002-1openalex-snapshot
Limiting laws and counterion condensation in polyelectrolyte solutions
inferredcites →https://doi.org/10.1016/j.bpj.2014.01.021openalex-snapshot
Ion Counting from Explicit-Solvent Simulations and 3D-RISM
inferredcites →https://doi.org/10.1016/j.bpj.2015.07.004openalex-snapshot
Nucleosome Core Particle Disassembly and Assembly Kinetics Studied Using Single-Molecule Fluorescence
inferredcites →https://doi.org/10.1016/j.bpj.2018.03.001openalex-snapshot
Competitive Binding of Mg2+ and Na+ Ions to Nucleic Acids: From Helices to Tertiary Structures
inferredcites →https://doi.org/10.1016/j.cell.2014.10.054openalex-snapshot
Subnucleosomal Structures and Nucleosome Asymmetry across a Genome
inferredcites →https://doi.org/10.1016/j.cocis.2016.09.014openalex-snapshot
Cooperative action in DNA condensation
inferredcites →https://doi.org/10.1016/j.pbiomolbio.2010.07.002openalex-snapshot
Condensed DNA: Condensing the concepts
inferredcites →https://doi.org/10.1016/j.sbi.2010.11.006openalex-snapshot
Nucleosome structural studies
inferredcites →https://doi.org/10.1016/j.tcb.2006.12.001openalex-snapshot
HMG chromosomal proteins in development and disease
inferredcites →https://doi.org/10.1016/s0022-2836(02)00386-8openalex-snapshot
Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution
inferredcites →https://doi.org/10.1016/s0076-6879(03)75002-2openalex-snapshot
Reconstitution of Nucleosome Core Particles from Recombinant Histones and DNA
inferredcites →https://doi.org/10.1016/s0076-6879(09)69018-2openalex-snapshot
Probing Nucleic Acid–Ion Interactions with Buffer Exchange-Atomic Emission Spectroscopy
inferredcites →https://doi.org/10.1016/s0092-8674(00)81958-3openalex-snapshot
Twenty-Five Years of the Nucleosome, Fundamental Particle of the Eukaryote Chromosome
inferredcites →https://doi.org/10.1016/s0301-4622(02)00162-xopenalex-snapshot
Electrostatic free energy of the DNA double helix in counterion condensation theory
inferredcites →https://doi.org/10.1017/s0033583500002031openalex-snapshot
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
inferredcites →https://doi.org/10.1021/acs.biochem.8b00401openalex-snapshot
The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation
inferredcites →https://doi.org/10.1021/acs.jctc.7b00936openalex-snapshot
Holding the Nucleosome Together: A Quantitative Description of the DNA–Histone Interface in Solution
inferredcites →https://doi.org/10.1021/acs.langmuir.6b00442openalex-snapshot
Transcription Driven Phase Separation in Chromatin Brush
inferredcites →https://doi.org/10.1021/acs.macromol.7b01929openalex-snapshot
50th Anniversary Perspective : A Perspective on Polyelectrolyte Solutions
inferredcites →https://doi.org/10.1021/bi0302043openalex-snapshot
Histone−DNA Binding Free Energy Cannot Be Measured in Dilution-Driven Dissociation Experiments
inferredcites →https://doi.org/10.1021/bk-1998-0682.ch024openalex-snapshot
Modeling Unusual Nucleic Acid Structures
inferredcites →https://doi.org/10.1021/cr500373hopenalex-snapshot
Nucleosome Structure and Function
inferredcites →https://doi.org/10.1021/j100129a032openalex-snapshot
Salt dependence of oligoion-polyion binding: a thermodynamic description based on preferential interaction coefficients
inferredcites →https://doi.org/10.1021/j100867a024openalex-snapshot
Interactions of polyelectrolytes with simple electrolytes. II. Donnan equilibria obtained with DNA in solutions of 1-1 electrolytes
inferredcites →https://doi.org/10.1021/ja075020gopenalex-snapshot
Quantitative and Comprehensive Decomposition of the Ion Atmosphere around Nucleic Acids
inferredcites →https://doi.org/10.1021/ja107259yopenalex-snapshot
Counting Ions around DNA with Anomalous Small-Angle X-ray Scattering
inferredcites →https://doi.org/10.1021/ja800854uopenalex-snapshot
Critical Assessment of Nucleic Acid Electrostatics via Experimental and Computational Investigation of an Unfolded State Ensemble
inferredcites →https://doi.org/10.1021/ja905376qopenalex-snapshot
Counterion Atmosphere and Hydration Patterns near a Nucleosome Core Particle
inferredcites →https://doi.org/10.1021/jacs.5b08395openalex-snapshot
Cation–Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting
inferredcites →https://doi.org/10.1021/jacs.6b04289openalex-snapshot
Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?
inferredcites →https://doi.org/10.1021/jacs.7b01830openalex-snapshot
Determination of Ion Atmosphere Effects on the Nucleic Acid Electrostatic Potential and Ligand Association Using AH+·C Wobble Formation in Double-Stranded DNA
inferredcites →https://doi.org/10.1021/jacs.7b08870openalex-snapshot
Single-Molecule Fluorescence Reveals Commonalities and Distinctions among Natural and in Vitro -Selected RNA Tertiary Motifs in a Multistep Folding Pathway
inferredcites →https://doi.org/10.1038/38444openalex-snapshot
Crystal structure of the nucleosome core particle at 2.8 Å resolution
inferredcites →https://doi.org/10.1038/nature01595openalex-snapshot
The structure of DNA in the nucleosome core
inferredcites →https://doi.org/10.1038/nature08473openalex-snapshot
The role of DNA shape in protein–DNA recognition
inferredcites →https://doi.org/10.1038/nature22822openalex-snapshot
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
inferredcites →https://doi.org/10.1038/nprot.2012.112openalex-snapshot
A cell-free system for functional centromere and kinetochore assembly
inferredcites →https://doi.org/10.1038/nrg3900openalex-snapshot
Chromatin regulation at the frontier of synthetic biology
inferredcites →https://doi.org/10.1038/nrm3382openalex-snapshot
New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
inferredcites →https://doi.org/10.1038/nrm3884openalex-snapshot
The structure, function and evolution of proteins that bind DNA and RNA
inferredcites →https://doi.org/10.1038/nsmb.2506openalex-snapshot
Determinants of nucleosome positioning
inferredcites →https://doi.org/10.1038/nsmb1323openalex-snapshot
The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression
inferredcites →https://doi.org/10.1038/s41586-018-0549-5openalex-snapshot
The interaction landscape between transcription factors and the nucleosome
inferredcites →https://doi.org/10.1038/s41598-018-25429-1openalex-snapshot
Cryo-EM of nucleosome core particle interactions in trans
inferredcites →https://doi.org/10.1039/b306570gopenalex-snapshot
Determination of halogens in organic compounds by high resolution inductively coupled plasma mass spectrometry (HR-ICP-MS)
inferredcites →https://doi.org/10.1063/1.1672157openalex-snapshot
Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions I. Colligative Properties
inferredcites →https://doi.org/10.1063/1.1672158openalex-snapshot
Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions II. Self-Diffusion of the Small Ions
inferredcites →https://doi.org/10.1063/1.1701839openalex-snapshot
Theory of counter-ion condensation on flexible polyelectrolytes: Adsorption mechanism
inferredcites →https://doi.org/10.1073/pnas.1109594108openalex-snapshot
Frustration in protein–DNA binding influences conformational switching and target search kinetics
inferredcites →https://doi.org/10.1073/pnas.221234598openalex-snapshot
A thermodynamic framework for Mg 2+ binding to RNA
inferredcites →https://doi.org/10.1074/jbc.m302817200openalex-snapshot
Intra- and Inter-nucleosomal Protein-DNA Interactions of the Core Histone Tail Domains in a Model System
inferredcites →https://doi.org/10.1088/0953-8984/27/38/383001openalex-snapshot
Compaction of bacterial genomic DNA: clarifying the concepts
inferredcites →https://doi.org/10.1088/0953-8984/27/6/060301openalex-snapshot
The physics of chromatin
inferredcites →https://doi.org/10.1093/nar/gkg922openalex-snapshot
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
inferredcites →https://doi.org/10.1093/nar/gkh381openalex-snapshot
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
inferredcites →https://doi.org/10.1093/nar/gkw1305openalex-snapshot
Counting the ions surrounding nucleic acids
inferredcites →https://doi.org/10.1103/physrevlett.90.188103openalex-snapshot
Counterion Distribution around DNA Probed by Solution X-Ray Scattering
inferredcites →https://doi.org/10.1128/mcb.02181-06openalex-snapshot
The H3 Tail Domain Participates in Multiple Interactions during Folding and Self-Association of Nucleosome Arrays
inferredcites →https://doi.org/10.1146/annurev-biochem-060409-092720openalex-snapshot
Understanding Nucleic Acid–Ion Interactions
inferredcites →https://doi.org/10.1146/annurev-biophys-042910-155329openalex-snapshot
Nucleosome Structure(s) and Stability: Variations on a Theme
inferredcites →https://doi.org/10.1146/annurev.biophys.29.1.497openalex-snapshot
Electrostatic Mechanisms of DNA Deformation
inferredcites →https://doi.org/10.1201/9780203809075openalex-snapshot
Molecular Driving Forces
inferredcites →https://doi.org/10.1261/rna.5205404openalex-snapshot
A guide to ions and RNA structure
inferredcites →https://doi.org/10.1371/journal.pcbi.1000146openalex-snapshot
Classifying RNA-Binding Proteins Based on Electrostatic Properties
inferredcites →https://doi.org/10.4324/9780203809075openalex-snapshot
Molecular Driving Forces
inferredcites →https://doi.org/10.7554/elife.13450openalex-snapshot
Nucleosome breathing and remodeling constrain CRISPR-Cas9 function
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.