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Genome-wide Prediction of Potential Polycomb Response Elements and their Functions

https://doi.org/10.1101/516500
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4419-6673-5_3openalex-snapshot
Maintenance of Hox Gene Expression Patterns
inferredcites →https://doi.org/10.1016/0005-2795(75)90109-9openalex-snapshot
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
inferredcites →https://doi.org/10.1016/b978-0-12-407677-8.00003-8openalex-snapshot
Polycomb Group Response Elements in Drosophila and Vertebrates
inferredcites →https://doi.org/10.1016/j.biocel.2015.05.006openalex-snapshot
Recruiting polycomb to chromatin
inferredcites →https://doi.org/10.1016/j.ceb.2007.04.010openalex-snapshot
Polycomb comes of age: genome-wide profiling of target sites
inferredcites →https://doi.org/10.1016/j.cell.2006.02.043openalex-snapshot
Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2008.01.053openalex-snapshot
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
inferredcites →https://doi.org/10.1016/j.cell.2010.12.026openalex-snapshot
Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2011.01.006openalex-snapshot
Are Polycomb Group Bodies Gene Silencing Factories?
inferredcites →https://doi.org/10.1016/j.cell.2012.03.051openalex-snapshot
Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
inferredcites →https://doi.org/10.1016/j.cell.2014.08.009openalex-snapshot
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
inferredcites →https://doi.org/10.1016/j.gde.2010.04.015openalex-snapshot
Regulation of cell identity by plant Polycomb and trithorax group proteins
inferredcites →https://doi.org/10.1016/j.molcel.2018.05.032openalex-snapshot
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
inferredcites →https://doi.org/10.1016/j.stem.2011.12.006openalex-snapshot
Nonoverlapping Functions of the Polycomb Group Cbx Family of Proteins in Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.stem.2015.08.009openalex-snapshot
Polycomb Regulates Mesoderm Cell Fate-Specification in Embryonic Stem Cells through Activation and Repression Mechanisms
inferredcites →https://doi.org/10.1016/s0092-8674(02)00976-5openalex-snapshot
Histone Methyltransferase Activity of a Drosophila Polycomb Group Repressor Complex
inferredcites →https://doi.org/10.1016/s0925-4773(03)00083-2openalex-snapshot
Molecular and genetic analysis of the Polycomb group gene Sex combs extra/Ring in Drosophila
inferredcites →https://doi.org/10.1016/s1097-2765(00)80106-9openalex-snapshot
The Drosophila Polycomb Group Gene pleiohomeotic Encodes a DNA Binding Protein with Homology to the Transcription Factor YY1
inferredcites →https://doi.org/10.1016/s1097-2765(00)80107-0openalex-snapshot
A Conserved Sequence Motif in Polycomb-Response Elements
inferredcites →https://doi.org/10.1016/s1534-5807(03)00337-xopenalex-snapshot
Genome-Wide Prediction of Polycomb/Trithorax Response Elements in Drosophila melanogaster
inferredcites →https://doi.org/10.1023/a:1010933404324openalex-snapshot
Random Forests
inferredcites →https://doi.org/10.1038/35088096openalex-snapshot
A Drosophila Polycomb group complex includes Zeste and dTAFII proteins
inferredcites →https://doi.org/10.1038/459927aopenalex-snapshot
Unlocking the secrets of the genome
inferredcites →https://doi.org/10.1038/ncb1637openalex-snapshot
Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
inferredcites →https://doi.org/10.1038/ng1817openalex-snapshot
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
inferredcites →https://doi.org/10.1038/nprot.2009.55openalex-snapshot
Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos
inferredcites →https://doi.org/10.1038/nrg3663openalex-snapshot
CTCF: an architectural protein bridging genome topology and function
inferredcites →https://doi.org/10.1073/pnas.1520926113openalex-snapshot
Combgap contributes to recruitment of Polycomb group proteins in Drosophila
inferredcites →https://doi.org/10.1074/jbc.r117.800367openalex-snapshot
Structure, mechanism, and regulation of polycomb-repressive complex 2
inferredcites →https://doi.org/10.1093/bioinformatics/btp658openalex-snapshot
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images
inferredcites →https://doi.org/10.1093/bioinformatics/btr064openalex-snapshot
FIMO: scanning for occurrences of a given motif
inferredcites →https://doi.org/10.1093/bioinformatics/btr189openalex-snapshot
MEME-ChIP: motif analysis of large DNA datasets
inferredcites →https://doi.org/10.1093/emboj/16.12.3621openalex-snapshot
Co‐localization of Polycomb protein and GAGA factor on regulatory elements responsible for the maintenance of homeotic gene expression
inferredcites →https://doi.org/10.1093/genetics/136.3.1025openalex-snapshot
Unusual properties of regulatory DNA from the Drosophila engrailed gene: three "pairing-sensitive" sites within a 1.6-kb region.
inferredcites →https://doi.org/10.1093/nar/gki827openalex-snapshot
An Sp1/KLF binding site is important for the activity of a Polycomb group response element from the Drosophila engrailed gene
inferredcites →https://doi.org/10.1093/nar/gkl250openalex-snapshot
jPREdictor: a versatile tool for the prediction of cis-regulatory elements
inferredcites →https://doi.org/10.1093/nar/gks209openalex-snapshot
Genome-wide polycomb target gene prediction in Drosophila melanogaster
inferredcites →https://doi.org/10.1093/nar/gkw1016openalex-snapshot
FlyBase at 25: looking to the future
inferredcites →https://doi.org/10.1101/cshperspect.a019331openalex-snapshot
Transcriptional Silencing by Polycomb-Group Proteins
inferredcites →https://doi.org/10.1101/cshperspect.a019349openalex-snapshot
Transcriptional Regulation by Trithorax-Group Proteins
inferredcites →https://doi.org/10.1101/gad.292870.116openalex-snapshot
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements
inferredcites →https://doi.org/10.1101/gad.303206.117openalex-snapshot
Multitasking by Polycomb response elements
inferredcites →https://doi.org/10.1101/gad.377406openalex-snapshot
A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.1198374openalex-snapshot
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
inferredcites →https://doi.org/10.1186/gb-2007-8-2-r24openalex-snapshot
Quantifying similarity between motifs
inferredcites →https://doi.org/10.1242/dev.081174openalex-snapshot
Anterior-posterior differences in HoxD chromatin topology in limb development
inferredcites →https://doi.org/10.1371/journal.pbio.0060261openalex-snapshot
Evolutionary Plasticity of Polycomb/Trithorax Response Elements in Drosophila Species
inferredcites →https://doi.org/10.1371/journal.pbio.1000013openalex-snapshot
Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos
inferredcites →https://doi.org/10.1371/journal.pgen.1002266openalex-snapshot
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1371/journal.pgen.1003135openalex-snapshot
A Polycomb Group Protein Is Retained at Specific Sites on Chromatin in Mitosis
inferredcites →https://doi.org/10.1534/genetics.106.056002openalex-snapshot
The Drosophila Boundary Element-Associated Factors BEAF-32A and BEAF-32B Affect Chromatin Structure
inferredcites →https://doi.org/10.1534/genetics.113.153247openalex-snapshot
Architectural and Functional Diversity of Polycomb Group Response Elements in Drosophila
inferredcites →https://doi.org/10.1534/genetics.115.185116openalex-snapshot
Polycomb and Trithorax Group Genes in Drosophila
inferredcites →https://doi.org/10.4161/epi.21141openalex-snapshot
Epigenetics

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1126/sciadv.abc8492openalex-snapshot
Persistent epigenetic reprogramming of sweet taste by diet
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