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De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments

https://doi.org/10.1101/521872
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New flaxseed orbitides: Detection, sequencing, and 15N incorporation
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Über ein Oligopeptid aus Leinsamen
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Anti-inflammatory activity of a new cyclic peptide, citrusin XI, isolated from the fruits of Citrus unshiu
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Flaxseed (Linum usitatissimum L.) bioactive compounds and peptide nomenclature: A review
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Cyclolinopeptides B - E, new cyclic peptides from Linum usitatissimum
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A NEW IMMUNOSUPPRESSIVE CYCLIC NONAPEPTIDE, CYCLOLINOPEPTIDE B FROM LINUM USITATISSIMUM
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Health effects with consumption of the flax lignan secoisolariciresinol diglucoside
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Automated Genome Mining of Ribosomal Peptide Natural Products
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Modular Peptide Synthetases Involved in Nonribosomal Peptide Synthesis
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Surugamides A–E, Cyclic Octapeptides with Four d -Amino Acid Residues, from a Marine Streptomyces sp.: LC–MS-Aided Inspection of Partial Hydrolysates for the Distinction of d - and l -Amino Acid Residues in the Sequence
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Antifungal Cyclic Peptides from Psammosilene tunicoides
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NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery
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Ribifolin, an Orbitide fromJatropha ribifolia, and Its Potential Antimalarial Activity
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Massetolides A−H, Antimycobacterial Cyclic Depsipeptides Produced by Two Pseudomonads Isolated from Marine Habitats
inferredcites →https://doi.org/10.1021/pr200323aopenalex-snapshot
Cycloquest: Identification of Cyclopeptides via Database Search of Their Mass Spectra against Genome Databases
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A New Approach to Evaluating Statistical Significance of Spectral Identifications
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A new antibiotic kills pathogens without detectable resistance
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How to apply de Bruijn graphs to genome assembly
inferredcites →https://doi.org/10.1038/nbt.3597openalex-snapshot
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
inferredcites →https://doi.org/10.1038/nchembio.1884openalex-snapshot
Computational approaches to natural product discovery
inferredcites →https://doi.org/10.1038/nchembio.2219openalex-snapshot
Dereplication of peptidic natural products through database search of mass spectra
inferredcites →https://doi.org/10.1038/nchembio.542openalex-snapshot
Albumins and their processing machinery are hijacked for cyclic peptides in sunflower
inferredcites →https://doi.org/10.1038/nmeth.1350openalex-snapshot
Dereplication and de novo sequencing of nonribosomal peptides
inferredcites →https://doi.org/10.1038/nmeth.1609openalex-snapshot
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.197openalex-snapshot
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides
inferredcites →https://doi.org/10.1038/s41564-017-0094-2openalex-snapshot
Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra
inferredcites →https://doi.org/10.1039/c2np20085fopenalex-snapshot
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
inferredcites →https://doi.org/10.1039/c5np00050eopenalex-snapshot
Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks
inferredcites →https://doi.org/10.1073/pnas.0701130104openalex-snapshot
Protein identification by spectral networks analysis
inferredcites →https://doi.org/10.1073/pnas.1203689109openalex-snapshot
Mass spectral molecular networking of living microbial colonies
inferredcites →https://doi.org/10.1073/pnas.1206376109openalex-snapshot
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
inferredcites →https://doi.org/10.1073/pnas.1615581113openalex-snapshot
Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity
inferredcites →https://doi.org/10.1073/pnas.1618221114openalex-snapshot
Antibiotic discovery is a walk in the park
inferredcites →https://doi.org/10.1080/01635580802419764openalex-snapshot
Effects of Dietary Flaxseed on Intestinal Tumorigenesis in ApcMinMouse
inferredcites →https://doi.org/10.1089/cmb.2011.0158openalex-snapshot
Multiplex De Novo Sequencing of Peptide Antibiotics
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/molbev/msx104openalex-snapshot
Stepwise Evolution of a Buried Inhibitor Peptide over 45 My
inferredcites →https://doi.org/10.1093/nar/gkr323openalex-snapshot
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
inferredcites →https://doi.org/10.1105/tpc.114.123620openalex-snapshot
Evolutionary Origins of a Bioactive Peptide Buried within Preproalbumin
inferredcites →https://doi.org/10.1109/bigdata.2016.7840731openalex-snapshot
Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease
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Microbiology, Genomics, and Clinical Significance of the Pseudomonas fluorescens Species Complex, an Unappreciated Colonizer of Humans
inferredcites →https://doi.org/10.1128/mr.56.4.662-676.1992openalex-snapshot
Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens
inferredcites →https://doi.org/10.1186/s12864-015-1486-4openalex-snapshot
A family of small cyclic amphipathic peptides (SCAmpPs) genes in citrus
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Antimicrobial Activity of Flaxseed Meal Extract against Escherichia coli O157:H7 and Staphylococcus aureus Inoculated on Red Mustard
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