On the public citation graph

Elucidating small RNA pathways in Arabidopsis thaliana egg cells

https://doi.org/10.1101/525956
0 signed · 74 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/978-1-4939-7286-9_18openalex-snapshot
Manual Isolation of Living Cells from the Arabidopsis thaliana Female Gametophyte by Micromanipulation
inferredcites →https://doi.org/10.1007/s00497-013-0215-xopenalex-snapshot
Transgenic manipulation of plant embryo sacs tracked through cell-type-specific fluorescent markers: cell labeling, cell ablation, and adventitious embryos
inferredcites →https://doi.org/10.1007/s00497-018-0321-xopenalex-snapshot
Small RNA pathways responsible for non-cell-autonomous regulation of plant reproduction
inferredcites →https://doi.org/10.1016/j.cell.2005.04.004openalex-snapshot
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
inferredcites →https://doi.org/10.1016/j.cell.2007.01.043openalex-snapshot
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
inferredcites →https://doi.org/10.1016/j.cell.2008.12.038openalex-snapshot
Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
inferredcites →https://doi.org/10.1016/j.cub.2010.11.012openalex-snapshot
Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis
inferredcites →https://doi.org/10.1016/j.cub.2012.04.061openalex-snapshot
Overcoming Hybridization Barriers by the Secretion of the Maize Pollen Tube Attractant ZmEA1 from Arabidopsis Ovules
inferredcites →https://doi.org/10.1016/j.cub.2015.11.020openalex-snapshot
BLOC-1 Brings Together the Actin and Microtubule Cytoskeletons to Generate Recycling Endosomes
inferredcites →https://doi.org/10.1016/j.cub.2015.12.032openalex-snapshot
Fertilization Mechanisms in Flowering Plants
inferredcites →https://doi.org/10.1016/j.gde.2011.01.017openalex-snapshot
Epigenetic regulation and reprogramming during gamete formation in plants
inferredcites →https://doi.org/10.1016/j.molcel.2004.07.007openalex-snapshot
Human Argonaute2 Mediates RNA Cleavage Targeted by miRNAs and siRNAs
inferredcites →https://doi.org/10.1016/j.tig.2010.06.001openalex-snapshot
DNA methylation reprogramming during plant sexual reproduction?
inferredcites →https://doi.org/10.1016/s1360-1385(02)02251-3openalex-snapshot
GATEWAY™ vectors for Agrobacterium-mediated plant transformation
inferredcites →https://doi.org/10.1038/nature07415openalex-snapshot
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
inferredcites →https://doi.org/10.1038/nature07882openalex-snapshot
Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells
inferredcites →https://doi.org/10.1038/nature08828openalex-snapshot
Control of female gamete formation by a small RNA pathway in Arabidopsis
inferredcites →https://doi.org/10.1038/nature09465openalex-snapshot
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
inferredcites →https://doi.org/10.1038/nature13069openalex-snapshot
miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
inferredcites →https://doi.org/10.1038/nprot.2006.333openalex-snapshot
In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples
inferredcites →https://doi.org/10.1038/nrm4085openalex-snapshot
The expanding world of small RNAs in plants
inferredcites →https://doi.org/10.1038/s41588-017-0032-5openalex-snapshot
Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis
inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00343.xopenalex-snapshot
Floral dip: a simplified method for Agrobacterium ‐mediated transformation of Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/aob/mcr111openalex-snapshot
Identification and characterization of TcCRP1, a pollen tube attractant from Torenia concolor
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu380openalex-snapshot
miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1093/nar/gkr319openalex-snapshot
psRNATarget: a plant small RNA target analysis server
inferredcites →https://doi.org/10.1093/nar/gkt1056openalex-snapshot
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology
inferredcites →https://doi.org/10.1093/nar/gkt1181openalex-snapshot
miRBase: annotating high confidence microRNAs using deep sequencing data
inferredcites →https://doi.org/10.1093/nar/gkt979openalex-snapshot
Ensembl Genomes 2013: scaling up access to genome-wide data
inferredcites →https://doi.org/10.1093/nar/gky336openalex-snapshot
CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses
inferredcites →https://doi.org/10.1101/007427openalex-snapshot
Butter: High-precision genomic alignment of small RNA-seq data
inferredcites →https://doi.org/10.1104/pp.16.01024openalex-snapshot
SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression
inferredcites →https://doi.org/10.1104/pp.16.01571openalex-snapshot
Gametophytic Pollen Tube Guidance: Attractant Peptides, Gametic Controls, and Receptors
inferredcites →https://doi.org/10.1105/tpc.016238openalex-snapshot
Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and Its APETALA2 -Like Target Genes
inferredcites →https://doi.org/10.1105/tpc.018192openalex-snapshot
Female Gametophyte Development
inferredcites →https://doi.org/10.1105/tpc.107.053199openalex-snapshot
A Germ Cell–Specific Gene of theARGONAUTEFamily Is Essential for the Progression of Premeiotic Mitosis and Meiosis during Sporogenesis in Rice
inferredcites →https://doi.org/10.1105/tpc.110.079020openalex-snapshot
Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein
inferredcites →https://doi.org/10.1105/tpc.15.00920openalex-snapshot
RNAi in Plants: An Argonaute-Centered View
inferredcites →https://doi.org/10.1105/tpc.2.8.755openalex-snapshot
Early Flower Development in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02332.xopenalex-snapshot
The transcript composition of egg cells changes significantly following fertilization in wheat (Triticum aestivum L.)
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04592.xopenalex-snapshot
Members of the RKD transcription factor family induce an egg cell‐like gene expression program
inferredcites →https://doi.org/10.1111/nph.14293openalex-snapshot
RWP‐RK domain‐containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis
inferredcites →https://doi.org/10.1111/tpj.13270openalex-snapshot
Sensitive whole mount in situ localization of small RNA s in plants
inferredcites →https://doi.org/10.1126/science.1062429openalex-snapshot
Pollen Tube Attraction by the Synergid Cell
inferredcites →https://doi.org/10.1126/science.1104954openalex-snapshot
Micropylar Pollen Tube Guidance by Egg Apparatus 1 of Maize
inferredcites →https://doi.org/10.1126/science.1129333openalex-snapshot
A Distinct Small RNA Pathway Silences Selfish Genetic Elements in the Germline
inferredcites →https://doi.org/10.1126/science.1167324openalex-snapshot
Auxin-Dependent Patterning and Gamete Specification in the Arabidopsis Female Gametophyte
inferredcites →https://doi.org/10.1126/science.1223944openalex-snapshot
Egg Cell–Secreted EC1 Triggers Sperm Cell Activation During Double Fertilization
inferredcites →https://doi.org/10.1126/science.1224839openalex-snapshot
Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes
inferredcites →https://doi.org/10.1186/1471-2229-10-110openalex-snapshot
Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.00842openalex-snapshot
Dissection of floral induction pathways using global expression analysis
inferredcites →https://doi.org/10.1242/dev.00963openalex-snapshot
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
inferredcites →https://doi.org/10.1242/dev.02803openalex-snapshot
Transcriptional regulation of epidermal cell fate in theArabidopsisembryo
inferredcites →https://doi.org/10.1242/dev.075390openalex-snapshot
Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis
inferredcites →https://doi.org/10.1242/dev.161786openalex-snapshot
piRNAs and PIWI proteins: regulators of gene expression in development and stem cells
inferredcites →https://doi.org/10.1242/jcs.184937openalex-snapshot
A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1
inferredcites →https://doi.org/10.12688/f1000research.14508.1openalex-snapshot
Recent advances in understanding female gametophyte development
inferredcites →https://doi.org/10.1371/journal.pbio.1000148openalex-snapshot
Repression of Flowering by the miR172 Target SMZ
inferredcites →https://doi.org/10.1371/journal.pbio.1001449openalex-snapshot
A Species-Specific Cluster of Defensin-Like Genes Encodes Diffusible Pollen Tube Attractants in Arabidopsis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s00497-021-00421-4openalex-snapshot
The emerging role of small RNAs in ovule development, a kind of magic
inferred← citeshttps://doi.org/10.1016/j.pbi.2019.11.006openalex-snapshot
RNA-directed DNA Methylation and sexual reproduction: expanding beyond the seed
inferred← citeshttps://doi.org/10.1038/s41477-021-00958-2openalex-snapshot
Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants
inferred← citeshttps://doi.org/10.1101/2020.05.18.102863openalex-snapshot
ASYMMETRIC EXPRESSION OF ARGONAUTES IN ARABIDOPSIS REPRODUCTIVE TISSUES
inferred← citeshttps://doi.org/10.1101/2022.01.25.477718openalex-snapshot
Two AGO proteins with transposon-derived sRNA cargo mark the germline in Arabidopsis
inferred← citeshttps://doi.org/10.1111/nph.17938openalex-snapshot
The Physcomitrium patens egg cell expresses several distinct epigenetic components and utilizes homologues of BONOBO genes for cell specification
inferred← citeshttps://doi.org/10.1146/annurev-arplant-082520-094112openalex-snapshot
Comparative Embryogenesis in Angiosperms: Activation and Patterning of Embryonic Cell Lineages
inferred← citeshttps://doi.org/10.1186/s12870-021-03323-9openalex-snapshot
MicroRNA biogenesis and activity in plant cell dedifferentiation stimulated by cell wall removal
inferred← citeshttps://doi.org/10.1515/hsz-2023-0195openalex-snapshot
RBPome identification in egg-cell like callus of Arabidopsis
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.