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Revealing the ocean metabolome with mass spectrometry

https://doi.org/10.1101/528307
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Employing ProteoWizard to Convert Raw Mass Spectrometry Data
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Extraction efficiency and quantification of dissolved metabolites in targeted marine metabolomics
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A sensitive liquid chromatography/tandem mass spectrometry method for the determination of natural and synthetic steroid estrogens in seawater and marine biota, with a focus on proposed Water Framework Directive Environmental Quality Standards
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Gram-Negative Mesophilic Sulfate-Reducing Bacteria
inferredcites →https://doi.org/10.1016/0304-4203(81)90016-5openalex-snapshot
Chemical and GC-MS characterization of marine dissolved lipids
inferredcites →https://doi.org/10.1016/j.ab.2005.11.019openalex-snapshot
Extracellular metabolomics: A metabolic footprinting approach to assess fiber degradation in complex media
inferredcites →https://doi.org/10.1016/j.marchem.2008.05.008openalex-snapshot
Advanced characterization of marine dissolved organic matter by combining reversed-phase liquid chromatography and FT-ICR-MS
inferredcites →https://doi.org/10.1016/j.marchem.2011.09.004openalex-snapshot
A novel protocol for determining the concentration and composition of sugars in particulate and in high molecular weight dissolved organic matter (HMW-DOM) in seawater
inferredcites →https://doi.org/10.1016/j.soilbio.2014.10.007openalex-snapshot
Untargeted soil metabolomics methods for analysis of extractable organic matter
inferredcites →https://doi.org/10.1016/s0016-7037(99)00128-3openalex-snapshot
Lipid composition in particulate and dissolved organic matter in the Delaware Estuary: sources and diagenetic patterns
inferredcites →https://doi.org/10.1016/s0304-4203(96)00083-7openalex-snapshot
Determination of low-molecular-weight organic acid concentrations in seawater and pore-water samples via HPLC
inferredcites →https://doi.org/10.1016/s1044-0305(99)00047-1openalex-snapshot
An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data
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Extraction and GC/MS Analysis of the Human Blood Plasma Metabolome
inferredcites →https://doi.org/10.1021/ac051437yopenalex-snapshot
XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification
inferredcites →https://doi.org/10.1021/ac202450gopenalex-snapshot
CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets
inferredcites →https://doi.org/10.1021/ac50047a019openalex-snapshot
High performance liquid chromatographic determination of subpicomole amounts of amino acids by precolumn fluorescence derivatization with o-phthaldialdehyde
inferredcites →https://doi.org/10.1021/ac9019522openalex-snapshot
FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry
inferredcites →https://doi.org/10.1038/81137openalex-snapshot
Metabolite profiling for plant functional genomics
inferredcites →https://doi.org/10.1038/ncomms4114openalex-snapshot
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
inferredcites →https://doi.org/10.1038/ncomms7711openalex-snapshot
Marine sequestration of carbon in bacterial metabolites
inferredcites →https://doi.org/10.1038/nmeth.4512openalex-snapshot
Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics
inferredcites →https://doi.org/10.1038/nprot.2011.375openalex-snapshot
Global urinary metabolic profiling procedures using gas chromatography–mass spectrometry
inferredcites →https://doi.org/10.1046/j.1365-313x.2000.00774.xopenalex-snapshot
Simultaneous analysis of metabolites in potato tuber by gas chromatography–mass spectrometry
inferredcites →https://doi.org/10.1046/j.1432-1033.2003.03448.xopenalex-snapshot
Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC‐MS
inferredcites →https://doi.org/10.1073/pnas.0710305105openalex-snapshot
cis -Jasmone induces Arabidopsis genes that affect the chemical ecology of multitrophic interactions with aphids and their parasitoids
inferredcites →https://doi.org/10.1073/pnas.1514645113openalex-snapshot
Deciphering ocean carbon in a changing world
inferredcites →https://doi.org/10.1093/bioinformatics/bti236openalex-snapshot
GMD@CSB.DB: the Golm Metabolome Database
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.1261359openalex-snapshot
Structure and function of the global ocean microbiome
inferredcites →https://doi.org/10.1128/aem.01742-08openalex-snapshot
Time-Resolved Metabolic Footprinting for Nonlinear Modeling of Bacterial Substrate Utilization
inferredcites →https://doi.org/10.2166/wh.2013.021openalex-snapshot
Development and validation of a GC–MS method for the evaluation of 17 endocrine disruptor compounds, including phytoestrogens and sitosterol, in coastal waters – their spatial and seasonal levels in Porto costal region (Portugal)
inferredcites →https://doi.org/10.3354/ame01804openalex-snapshot
Proteomics analysis of the response of the marine bacterium Marinobacter adhaerens HP15 to the diatom Thalassiosira weissflogii
inferredcites →https://doi.org/10.3389/fmars.2017.00405openalex-snapshot
High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter
inferredcites →https://doi.org/10.3390/metabo9040068openalex-snapshot
Drying Enhances Signal Intensities for Global GC–MS Metabolomics
inferredcites →https://doi.org/10.4319/lo.1961.6.2.0230openalex-snapshot
AN ENLARGED CLARKE–BUMPUS PLANKTON SAMPLER1
inferredcites →https://doi.org/10.4319/lom.2008.6.230openalex-snapshot
A simple and efficient method for the solid‐phase extraction of dissolved organic matter (SPE‐DOM) from seawater
inferredcites →https://doi.org/10.7554/elife.24214openalex-snapshot
Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

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inferred← citeshttps://doi.org/10.3389/fmars.2020.00250openalex-snapshot
An Untargeted Metabolomic Approach for Microphytobenthic Biofilms in Intertidal Mudflats
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