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Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica

https://doi.org/10.1101/532853
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1460-2075.1987.tb02587.xopenalex-snapshot
Plastid, nuclear and reverse transcriptase sequences in the mitochondrial genome of Oenothera: is genetic information transferred between organelles via RNA?
inferredcites →https://doi.org/10.1002/j.1537-2197.1996.tb12761.xopenalex-snapshot
The spatial distribution of chloroplast DNA and allozyme polymorphisms within A population of Silene alba (Caryophyllaceae)
inferredcites →https://doi.org/10.1007/978-94-011-2326-6_2openalex-snapshot
Botanical classification of tea
inferredcites →https://doi.org/10.1007/bf00037148openalex-snapshot
The protein-encoding gene T-urf13 is not edited in maize mitochondria
inferredcites →https://doi.org/10.1007/bf00175814openalex-snapshot
Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric coxI gene of Peperomia
inferredcites →https://doi.org/10.1007/bf02143500openalex-snapshot
Plant mitochondrial DNA evolved rapidly in structure, but slowly in sequence
inferredcites →https://doi.org/10.1007/bf02772108openalex-snapshot
Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
inferredcites →https://doi.org/10.1007/s00294-007-0161-yopenalex-snapshot
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
inferredcites →https://doi.org/10.1016/0092-8674(81)90187-2openalex-snapshot
The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)
inferredcites →https://doi.org/10.1016/j.mito.2014.05.008openalex-snapshot
Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea
inferredcites →https://doi.org/10.1016/j.molp.2017.04.002openalex-snapshot
The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis
inferredcites →https://doi.org/10.1023/b:ticu.0000009254.87882.71openalex-snapshot
Recent Advances of Tea (Camellia Sinensis) Biotechnology
inferredcites →https://doi.org/10.1038/299698a0openalex-snapshot
Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common
inferredcites →https://doi.org/10.1071/sb03015openalex-snapshot
Use of nuclear genes for phylogeny reconstruction in plants
inferredcites →https://doi.org/10.1073/pnas.0709121104openalex-snapshot
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
inferredcites →https://doi.org/10.1073/pnas.0907801107openalex-snapshot
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/bioinformatics/btm404openalex-snapshot
Clustal W and Clustal X version 2.0
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/molbev/msn009openalex-snapshot
The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing Sites
inferredcites →https://doi.org/10.1093/molbev/msq029openalex-snapshot
Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
inferredcites →https://doi.org/10.1093/molbev/msu079openalex-snapshot
Unprecedented Heterogeneity in the Synonymous Substitution Rate within a Plant Genome
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/29.22.4633openalex-snapshot
REPuter: the manifold applications of repeat analysis on a genomic scale
inferredcites →https://doi.org/10.1093/nar/gkp337openalex-snapshot
The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03195.xopenalex-snapshot
Recombination and the maintenance of plant organelle genome stability
inferredcites →https://doi.org/10.1186/1471-2105-6-96openalex-snapshot
PREP-Mt: predictive RNA editor for plant mitochondrial genes
inferredcites →https://doi.org/10.1186/1471-2148-14-151openalex-snapshot
Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
inferredcites →https://doi.org/10.1186/1741-7007-7-84openalex-snapshot
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1371/journal.pbio.1001241openalex-snapshot
Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates
inferredcites →https://doi.org/10.1371/journal.pone.0029704openalex-snapshot
Classification of Camellia (Theaceae) Species Using Leaf Architecture Variations and Pattern Recognition Techniques
inferredcites →https://doi.org/10.2307/2445849openalex-snapshot
The Spatial Distribution of Chloroplast DNA and Allozyme Polymorphisms within a Population of Silene alba (Caryophyllaceae)

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inferred← citeshttps://doi.org/10.1038/s41597-019-0201-8openalex-snapshot
Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica
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