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Isolates from colonic spirochaetosis in humans show high genomic divergence and carry potential pathogenic features but are not detected by 16S amplicon sequencing using standard primers for the human microbiota
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/978-1-4939-7033-9_1openalex-snapshot
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
inferredcites →https://doi.org/10.1016/0034-5288(95)90022-5openalex-snapshot
Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification
inferredcites →https://doi.org/10.1016/j.anaerobe.2017.03.012openalex-snapshot
Distribution and phylogeny of Brachyspira spp. in human intestinal spirochetosis revealed by FISH and 16S rRNA -gene analysis
inferredcites →https://doi.org/10.1016/j.chembiol.2011.02.011openalex-snapshot
Sequential Mechanism of Assembly of Multidrug Efflux Pump AcrAB-TolC
inferredcites →https://doi.org/10.1016/j.humpath.2014.10.026openalex-snapshot
Colonic spirochetosis is associated with colonic eosinophilia and irritable bowel syndrome in a general population in Sweden
inferredcites →https://doi.org/10.1016/j.jmb.2015.11.006openalex-snapshot
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
inferredcites →https://doi.org/10.1016/j.mimet.2007.11.015openalex-snapshot
Identification and genetic fingerprinting of Brachyspira species
inferredcites →https://doi.org/10.1016/j.resmic.2017.10.005openalex-snapshot
Regulation of the AcrAB-TolC efflux pump in Enterobacteriaceae
inferredcites →https://doi.org/10.1016/s0167-7012(01)00220-2openalex-snapshot
Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
inferredcites →https://doi.org/10.1016/s0723-2020(00)80065-xopenalex-snapshot
Phylogenetic Evidence for Novel and Genetically Different Intestinal Spirochetes Resembling Brachyspira aalborgi in the Mucosa of the Human Colon as Revealed by 16S rDNA Analysis
inferredcites →https://doi.org/10.1038/ismej.2011.41openalex-snapshot
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
inferredcites →https://doi.org/10.1038/nature11234openalex-snapshot
Structure, function and diversity of the healthy human microbiome
inferredcites →https://doi.org/10.1038/nbt.2939openalex-snapshot
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot
SignalP 4.0: discriminating signal peptides from transmembrane regions
inferredcites →https://doi.org/10.1042/bst20150226openalex-snapshot
Sialidases from gut bacteria: a mini-review
inferredcites →https://doi.org/10.1053/j.gastro.2005.11.061openalex-snapshot
Functional Bowel Disorders
inferredcites →https://doi.org/10.1073/pnas.0906412106openalex-snapshot
Shifting the genomic gold standard for the prokaryotic species definition
inferredcites →https://doi.org/10.1079/ahrr200128openalex-snapshot
Comparative pathology and pathogenesis of naturally acquired and experimentally induced colonic spirochetosis
inferredcites →https://doi.org/10.1080/00365520701245629openalex-snapshot
Human intestinal spirochetosis: Analysis of the symptoms of 209 patients
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/ajcp/86.5.679openalex-snapshot
Proposed Pathogenic Mechanism for the Diarrhea Associated with Human Intestinal Spirochetes
inferredcites →https://doi.org/10.1093/bioinformatics/btp356openalex-snapshot
Reordering contigs of draft genomes using the Mauve Aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bts252openalex-snapshot
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-snapshot
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
inferredcites →https://doi.org/10.1093/nar/28.1.33openalex-snapshot
The COG database: a tool for genome-scale analysis of protein functions and evolution
inferredcites →https://doi.org/10.1093/nar/gkh152openalex-snapshot
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1097/meg.0000000000000024openalex-snapshot
A randomly selected population sample undergoing colonoscopy
inferredcites →https://doi.org/10.1099/00207713-48-3-659openalex-snapshot
Population genetic analysis of Serpulina pilosicoli and its molecular epidemiology in villages in the Eastern Highlands of Papua New Guinea
inferredcites →https://doi.org/10.1099/ijsem.0.002516openalex-snapshot
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
inferredcites →https://doi.org/10.1099/jmm.0.05430-0openalex-snapshot
Analysis of genetic variation in Brachyspira aalborgi and related spirochaetes determined by partial sequencing of the 16S rRNA and NADH oxidase genes
inferredcites →https://doi.org/10.1099/mic.0.2007/009480-0openalex-snapshot
Sialic acid utilization by bacterial pathogens
inferredcites →https://doi.org/10.1101/081257openalex-snapshot
UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
inferredcites →https://doi.org/10.1101/286526openalex-snapshot
A comprehensive automated pipeline for human microbiome sampling, 16S rRNA gene sequencing and bioinformatics processing
inferredcites →https://doi.org/10.1111/lam.12373openalex-snapshot
Aeromonas piscicola AH-3 expresses an extracellular collagenase with cytotoxic properties
inferredcites →https://doi.org/10.1128/aem.00883-15openalex-snapshot
Diversity, Structures, and Collagen-Degrading Mechanisms of Bacterial Collagenolytic Proteases
inferredcites →https://doi.org/10.1128/cmr.00087-17openalex-snapshot
The Spirochete Brachyspira pilosicoli, Enteric Pathogen of Animals and Humans
inferredcites →https://doi.org/10.1128/jb.174.12.3889-3895.1992openalex-snapshot
Sequence analysis and characterization of the Porphyromonas gingivalis prtC gene, which expresses a novel collagenase activity
inferredcites →https://doi.org/10.1128/jcm.16.6.1127-1136.1982openalex-snapshot
Intestinal spirochetosis: morphological characterization and cultivation of the spirochete Brachyspira aalborgi gen. nov., sp. nov
inferredcites →https://doi.org/10.1128/jcm.35.2.482-485.1997openalex-snapshot
Identification and characterization of Serpulina pilosicoli isolates recovered from the blood of critically ill patients
inferredcites →https://doi.org/10.1128/jcm.38.10.3555-3560.2000openalex-snapshot
Brachyspira aalborgi Infection Diagnosed by Culture and 16S Ribosomal DNA Sequencing Using Human Colonic Biopsy Specimens
inferredcites →https://doi.org/10.1128/jcm.39.1.347-350.2001openalex-snapshot
Comparative Prevalences of Brachyspira aalborgi and Brachyspira ( Serpulina ) pilosicoli as Etiologic Agents of Histologically Identified Intestinal Spirochetosis in Australia
inferredcites →https://doi.org/10.1128/mmbr.68.1.132-153.2004openalex-snapshot
Diversity of Microbial Sialic Acid Metabolism
inferredcites →https://doi.org/10.1136/gutjnl-2016-312405openalex-snapshot
Unique pathology of colonic spirochaetosis characterised by mucosal eosinophilia is linked to diarrhoea and IBS
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/1471-2105-14-60openalex-snapshot
Genome sequence-based species delimitation with confidence intervals and improved distance functions
inferredcites →https://doi.org/10.1186/1471-2164-13-454openalex-snapshot
Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity
inferredcites →https://doi.org/10.1186/1471-2431-12-163openalex-snapshot
Intestinal Spirochetosis mimicking inflammatory bowel disease in children
inferredcites →https://doi.org/10.1186/1751-0147-46-257openalex-snapshot
Neither Hippurate-negative Brachyspira pilosicoli nor Brachyspira pilosicoli Type Strain Caused Diarrhoea in Early-weaned Pigs by Experimental Infection
inferredcites →https://doi.org/10.1186/s13059-016-0997-xopenalex-snapshot
Mash: fast genome and metagenome distance estimation using MinHash
inferredcites →https://doi.org/10.1292/jvms.18-0220openalex-snapshot
Simultaneous isolation of two species, Brachyspira pilosicoli and Brachyspira aalborgi, from a patient with ulcerative colitis
inferredcites →https://doi.org/10.1371/journal.pone.0011455openalex-snapshot
The Complete Genome Sequence of the Pathogenic Intestinal Spirochete Brachyspira pilosicoli and Comparison with Other Brachyspira Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0052281openalex-snapshot
Development of a Real-Time PCR for Identification of Brachyspira Species in Human Colonic Biopsies
inferredcites →https://doi.org/10.1371/journal.pone.0223364openalex-snapshot
ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.3109/02813439308994840openalex-snapshot
Reproducibility and validity of a postal questionnaire: The abdominal symptom study
inferredcites →https://doi.org/10.3205/000090openalex-snapshot
Human intestinal spirochetosis – a review
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3389/fmicb.2011.00189openalex-snapshot
Mechanism and Function of the Outer Membrane Channel TolC in Multidrug Resistance and Physiology of Enterobacteria
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