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Comparative genomics reveals the origin of fungal hyphae and multicellularity
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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A twelve-step program for evolving multicellularity and a division of labor
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A Novel Fungal Gene Encoding Chitin Synthase with a Myosin Motor-like Domain
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Comparison of Morphogenetic Networks of Filamentous Fungi and Yeast
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Phylogeny-aware alignment with PRANK
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Fruiting-Body Development in Ascomycetes
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Disruption of the GPI Protein-Encoding Gene IFF4 of Candida albicans Results in Decreased Adherence and Virulence
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Tyrosine kinase signaling and the emergence of multicellularity
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Phosphotyrosine Signaling: Evolving a New Cellular Communication System
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Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum
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Characterization of Dip1p Reveals a Switch in Arp2/3-Dependent Actin Assembly for Fission Yeast Endocytosis
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Dip1 Defines a Class of Arp2/3 Complex Activators that Function without Preformed Actin Filaments
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Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
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Evolution: Complex Multicellular Life with 5,500 Genes
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Regulation of polarised growth in fungi
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Endocytosis and exocytosis in hyphal growth
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Morphology and development in Aspergillus nidulans: A complex puzzle
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Rax2 is important for directional establishment of growth sites, but not for reorientation of growth axes, during Candida albicans hyphal morphogenesis
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The APSES family proteins in fungi: Characterizations, evolution and functions
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Hyphal morphogenesis: an evolutionary perspective
inferredcites →https://doi.org/10.1016/j.gene.2003.11.021openalex-snapshot
Rax1, a protein required for the establishment of the bipolar budding pattern in yeast
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The Spitzenkörper: a molecular perspective
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Diverse evolutionary paths to cell adhesion
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The origins of multicellularity: a multi-taxon genome initiative
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MAP kinase pathways as regulators of fungal virulence
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Single Fungal Kinesin Motor Molecules Move Processively along Microtubules
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Function of rax2p in the Polarized Growth of Fission Yeast
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Polarity in filamentous fungi: establishment, maintenance and new axes
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Endocytosis and the Actin Cytoskeleton in Dictyostelium discoideum
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Chapter 6 Phagocytosis and Host–Pathogen Interactions in Dictyostelium with a Look at Macrophages
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Involvement of the Arp2/3 complex in phagocytosis mediated by FcγR or CR3
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The multicellularity genes of dictyostelid social amoebas
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Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.149openalex-snapshot
Co-delivery of cell-wall-forming enzymes in the same vesicle for coordinated fungal cell wall formation
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The origin of Metazoa: a unicellular perspective
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Sensing the environment: lessons from fungi
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Growth of Candida albicans hyphae
inferredcites →https://doi.org/10.1038/nrmicro927openalex-snapshot
Origins of variation in the fungal cell surface
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Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements
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Leveraging single-cell genomics to expand the fungal tree of life
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Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi
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A gene required for nuclear migration in Neurospora crassa codes for a protein with cysteine‐rich, LIM/RING‐like domains
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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea ( Coprinus cinereus )
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Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages
inferredcites →https://doi.org/10.1073/pnas.1421398112openalex-snapshot
Toward major evolutionary transitions theory 2.0
inferredcites →https://doi.org/10.1074/jbc.ra117.001068openalex-snapshot
The invasin D protein from Yersinia pseudotuberculosis selectively binds the Fab region of host antibodies and affects colonization of the intestine
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R: A Language for Data Analysis and Graphics
inferredcites →https://doi.org/10.1083/jcb.128.4.577openalex-snapshot
myoA of Aspergillus nidulans encodes an essential myosin I required for secretion and polarized growth.
inferredcites →https://doi.org/10.1083/jcb.133.6.1277openalex-snapshot
Synthetic lethality screen identifies a novel yeast myosin I gene (MYO5): myosin I proteins are required for polarization of the actin cytoskeleton.
inferredcites →https://doi.org/10.1086/663681openalex-snapshot
A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model
inferredcites →https://doi.org/10.1089/106652700750050871openalex-snapshot
NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
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The Pleckstrin Homology Domain Proteins Slm1 and Slm2 Are Required for Actin Cytoskeleton Organization in Yeast and Bind Phosphatidylinositol-4,5-Bisphosphate and TORC2
inferredcites →https://doi.org/10.1091/mbc.e07-12-1272openalex-snapshot
Activation of Rac1 by the Guanine Nucleotide Exchange Factor Dck1 Is Required for Invasive Filamentous Growth in the PathogenCandida albicans
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Evolution and Classification of Myosins, a Paneukaryotic Whole-Genome Approach
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The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity
inferredcites →https://doi.org/10.1093/gbe/evv090openalex-snapshot
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/molbev/msp185openalex-snapshot
Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta
inferredcites →https://doi.org/10.1093/molbev/msv337openalex-snapshot
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities
inferredcites →https://doi.org/10.1093/molbev/msw238openalex-snapshot
Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/sysbio/syw022openalex-snapshot
Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction
inferredcites →https://doi.org/10.1098/rstb.2016.0502openalex-snapshot
New insights into the evolutionary history of Fungi from a 407 Ma Blastocladiomycota fossil showing a complex hyphal thallus
inferredcites →https://doi.org/10.1099/00221287-148-4-893openalex-snapshot
Sensing, signalling and integrating physical processes during Saccharomyces cerevisiae invasive and filamentous growth
inferredcites →https://doi.org/10.1099/mic.0.028902-0openalex-snapshot
The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity
inferredcites →https://doi.org/10.1101/283549openalex-snapshot
Genome-wide features of introns are evolutionary decoupled among themselves and from genome size throughout Eukarya
inferredcites →https://doi.org/10.1101/349894openalex-snapshot
Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity
inferredcites →https://doi.org/10.1111/brv.12418openalex-snapshot
Complex multicellularity in fungi: evolutionary convergence, single origin, or both?
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The origins of multicellular organisms
inferredcites →https://doi.org/10.1111/evo.12300openalex-snapshot
ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS
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Aspergillus nidulans class V and VI chitin synthases CsmA and CsmB, each with a myosin motor‐like domain, perform compensatory functions that are essential for hyphal tip growth
inferredcites →https://doi.org/10.1111/j.1365-2958.2008.06193.xopenalex-snapshot
Polarized growth in fungi – interplay between the cytoskeleton, positional markers and membrane domains
inferredcites →https://doi.org/10.1111/j.1365-2958.2009.07038.xopenalex-snapshot
Forward genetics in Candida albicans that reveals the Arp2/3 complex is required for hyphal formation, but not endocytosis
inferredcites →https://doi.org/10.1111/j.1462-5822.2009.01408.xopenalex-snapshot
Aspergillus fumigatusMedA governs adherence, host cell interactions and virulence
inferredcites →https://doi.org/10.1111/mmi.12911openalex-snapshot
Hybrid histidine kinases in pathogenic fungi
inferredcites →https://doi.org/10.1126/science.1083853openalex-snapshot
Evolution of Key Cell Signaling and Adhesion Protein Families Predates Animal Origins
inferredcites →https://doi.org/10.1126/science.1151084openalex-snapshot
The Premetazoan Ancestry of Cadherins
inferredcites →https://doi.org/10.1126/science.1188800openalex-snapshot
Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
inferredcites →https://doi.org/10.1126/science.1224339openalex-snapshot
Global Gene Deletion Analysis Exploring Yeast Filamentous Growth
inferredcites →https://doi.org/10.1126/science.289.5486.1920openalex-snapshot
Glomalean Fungi from the Ordovician
inferredcites →https://doi.org/10.1126/science.290.5498.1975openalex-snapshot
Multigenerational Cortical Inheritance of the Rax2 Protein in Orienting Polarity and Division in Yeast
inferredcites →https://doi.org/10.1126/scisignal.2002733openalex-snapshot
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases
inferredcites →https://doi.org/10.1128/aem.02765-05openalex-snapshot
Quorum Sensing in Dimorphic Fungi: Farnesol and Beyond
inferredcites →https://doi.org/10.1128/ec.00381-06openalex-snapshot
Hyphal Growth: a Tale of Motors, Lipids, and the Spitzenkorper
inferredcites →https://doi.org/10.1128/ec.05140-11openalex-snapshot
Global Analysis of Serine-Threonine Protein Kinase Genes in Neurospora crassa
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Polarisome Meets Spitzenkorper: Microscopy, Genetics, and Genomics Converge
inferredcites →https://doi.org/10.1128/mcb.11.3.1295openalex-snapshot
Use of a screen for synthetic lethal and multicopy suppressee mutants to identify two new genes involved in morphogenesis in Saccharomyces cerevisiae.
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The Mycelium as a Network
inferredcites →https://doi.org/10.1128/microbiolspec.funk-0044-2017openalex-snapshot
What Defines the “Kingdom” Fungi?
inferredcites →https://doi.org/10.1128/mmbr.00009-06openalex-snapshot
Environmental Sensing and Signal Transduction Pathways Regulating Morphopathogenic Determinants of Candida albicans
inferredcites →https://doi.org/10.1128/mmbr.00068-17openalex-snapshot
Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures
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Lessons from the Genome Sequence ofNeurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism
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Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life
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The Multiple Origins of Complex Multicellularity
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The Evolution of Multicellularity: A Minor Major Transition?
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The Origins of Multicellularity and the Early History of the Genetic Toolkit For Animal Development
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CELL POLARITY AND MORPHOGENESIS IN BUDDING YEAST
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Getting clinical trial results into practice: design, implementation, and process evaluation of the ALLHAT Dissemination Project
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Regularized gene selection in cancer microarray meta-analysis
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A multigene phylogeny of Olpidium and its implications for early fungal evolution
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Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML
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Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta
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Spatio-temporal MAPK dynamics mediate cell behavior coordination during fungal somatic cell fusion
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Fungal Communication Requires the MAK-2 Pathway Elements STE-20 and RAS-2, the NRC-1 Adapter STE-50 and the MAP Kinase Scaffold HAM-5
inferredcites →https://doi.org/10.1371/journal.pone.0030372openalex-snapshot
Comparative Live-Cell Imaging Analyses of SPA-2, BUD-6 and BNI-1 in Neurospora crassa Reveal Novel Features of the Filamentous Fungal Polarisome
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The Link between Morphotype Transition and Virulence in Cryptococcus neoformans
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Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
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Major Sensing Proteins in Pathogenic Fungi: The Hybrid Histidine Kinase Family
inferredcites →https://doi.org/10.1534/genetics.118.300904openalex-snapshot
Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa
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Quorum sensing in fungi – a review
inferredcites →https://doi.org/10.3389/fpls.2014.00737openalex-snapshot
Understanding “green” multicellularity: do seaweeds hold the key?
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The Fungi: 1, 2, 3 … 5.1 million species?
inferredcites →https://doi.org/10.3852/08-177openalex-snapshot
Branching of fungal hyphae: regulation, mechanisms and comparison with other branching systems
inferredcites →https://doi.org/10.3852/14-275openalex-snapshot
Cytology and molecular phylogenetics of Monoblepharidomycetes provide evidence for multiple independent origins of the hyphal habit in the Fungi
inferredcites →https://doi.org/10.3852/16-042openalex-snapshot
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
inferredcites →https://doi.org/10.4161/21541248.2014.989785openalex-snapshot
Regulation of phagocytosis by Rho GTPases
inferredcites →https://doi.org/10.7554/elife.01287openalex-snapshot
Regulated aggregative multicellularity in a close unicellular relative of metazoa
inferredcites →https://doi.org/10.7554/elife.26036openalex-snapshot
Dynamics of genomic innovation in the unicellular ancestry of animals
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Gene family innovation, conservation and loss on the animal stem lineage
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Origin and evolution of eukaryotic transcription factors
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A mechanistic explanation of the transition to simple multicellularity in fungi
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Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
inferred← citeshttps://doi.org/10.1038/s41467-024-47017-wopenalex-snapshot
Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages
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Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits
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A genomic perspective on fungal diversity and evolution
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Chytrid rhizoid morphogenesis resembles hyphal development in multicellular fungi and is adaptive to resource availability
inferred← citeshttps://doi.org/10.1101/815852openalex-snapshot
Enabling community-based metrology for wood-degrading fungi
inferred← citeshttps://doi.org/10.1534/genetics.120.303378openalex-snapshot
Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes
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Evolution of nitrogen-fixing root nodules : Analysis of conserved signalling modules in legumes and Parasponia
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The Population Genetics of Ploidy Change in Fungi
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Trechisporales emended with a segregation of Sistotremastrales ord. nov. (Basidiomycota)
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