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Lotus japonicus symbiosis signaling genes and their role in the establishment of root-associated bacterial and fungal communities

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00572-005-0033-6openalex-snapshot

Phylogenetic distribution and evolution of mycorrhizas in land plants

inferredcites →https://doi.org/10.1016/0168-9525(90)90186-aopenalex-snapshot

PCR protocols — A guide to methods and applications

inferredcites →https://doi.org/10.1016/0303-2647(75)90023-4openalex-snapshot

The origin of land plants: A matter of mycotrophism

inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot

AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

inferredcites →https://doi.org/10.1016/b978-012652840-4/50017-6openalex-snapshot

Vesicular-arbuscular mycorrhizas in agriculture and horticulture

inferredcites →https://doi.org/10.1016/j.cell.2018.10.020openalex-snapshot

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

inferredcites →https://doi.org/10.1016/j.chom.2014.01.011openalex-snapshot

CYCLOPS, A DNA-Binding Transcriptional Activator, Orchestrates Symbiotic Root Nodule Development

inferredcites →https://doi.org/10.1016/j.chom.2018.06.006openalex-snapshot

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia

inferredcites →https://doi.org/10.1016/j.cub.2013.12.053openalex-snapshot

Cleavage of the SYMBIOSIS RECEPTOR-LIKE KINASE Ectodomain Promotes Complex Formation with Nod Factor Receptor 5

inferredcites →https://doi.org/10.1016/j.simyco.2014.12.002openalex-snapshot

Generic concepts in Nectriaceae

inferredcites →https://doi.org/10.1038/ismej.2013.151openalex-snapshot

Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi

inferredcites →https://doi.org/10.1038/nature00841openalex-snapshot

A plant receptor-like kinase required for both bacterial and fungal symbiosis

inferredcites →https://doi.org/10.1038/nature02045openalex-snapshot

A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals

inferredcites →https://doi.org/10.1038/nature11336openalex-snapshot

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

inferredcites →https://doi.org/10.1038/ncomms1046openalex-snapshot

Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis

inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot

UPARSE: highly accurate OTU sequences from microbial amplicon reads

inferredcites →https://doi.org/10.1038/nmeth.2658openalex-snapshot

Differential abundance analysis for microbial marker-gene surveys

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1073/pnas.0400595101openalex-snapshot

A Ca 2+ /calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning

inferredcites →https://doi.org/10.1073/pnas.0608136104openalex-snapshot

A Medicago truncatula phosphate transporter indispensable for the arbuscular mycorrhizal symbiosis

inferredcites →https://doi.org/10.1073/pnas.0806858105openalex-snapshot

CYCLOPS, a mediator of symbiotic intracellular accommodation

inferredcites →https://doi.org/10.1073/pnas.1321597111openalex-snapshot

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

inferredcites →https://doi.org/10.1073/pnas.1504142112openalex-snapshot

Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi

inferredcites →https://doi.org/10.1073/pnas.1515426112openalex-snapshot

Algal ancestor of land plants was preadapted for symbiosis

inferredcites →https://doi.org/10.1073/pnas.1616564113openalex-snapshot

Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

inferredcites →https://doi.org/10.1073/pnas.1710455114openalex-snapshot

Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition

inferredcites →https://doi.org/10.1073/pnas.91.25.11841openalex-snapshot

Four hundred-million-year-old vesicular arbuscular mycorrhizae.

inferredcites →https://doi.org/10.1080/00275514.1995.12026569openalex-snapshot

Fossil Arbuscular Mycorrhizae from the Early Devonian

inferredcites →https://doi.org/10.1094/mpmi-20-8-0912openalex-snapshot

A Novel Nuclear Protein Interacts With the Symbiotic DMI3 Calcium- and Calmodulin-Dependent Protein Kinase of Medicago truncatula

inferredcites →https://doi.org/10.1104/pp.109.142190openalex-snapshot

TILLING in Lotus japonicus Identified Large Allelic Series for Symbiosis Genes and Revealed a Bias in Functionally Defective Ethyl Methanesulfonate Alleles toward Glycine Replacements

inferredcites →https://doi.org/10.1104/pp.114.255430openalex-snapshot

Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development inLotus japonicus

inferredcites →https://doi.org/10.1105/tpc.106.046938openalex-snapshot

NUCLEOPORIN85 Is Required for Calcium Spiking, Fungal and Bacterial Symbioses, and Seed Production in Lotus japonicus

inferredcites →https://doi.org/10.1105/tpc.108.063255openalex-snapshot

Lotus japonicusCASTOR and POLLUX Are Ion Channels Essential for Perinuclear Calcium Spiking in Legume Root Endosymbiosis

inferredcites →https://doi.org/10.1105/tpc.109.069807openalex-snapshot

NENA , a Lotus japonicus Homolog of Sec13 , Is Required for Rhizodermal Infection by Arbuscular Mycorrhiza Fungi and Rhizobia but Dispensable for Cortical Endosymbiotic Development

inferredcites →https://doi.org/10.1111/2041-210x.12073openalex-snapshot

Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02926.xopenalex-snapshot

Analysis of calcium spiking using a cameleon calcium sensor reveals that nodulation gene expression is regulated by calcium spike number and the developmental status of the cell

inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03464.xopenalex-snapshot

Arbuscular mycorrhizal hyphopodia and germinated spore exudates trigger Ca2+ spiking in the legume and nonlegume root epidermis

inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01437.xopenalex-snapshot

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

inferredcites →https://doi.org/10.1111/nph.13115openalex-snapshot

Interplant signalling through hyphal networks

inferredcites →https://doi.org/10.1111/nph.14403openalex-snapshot

Phosphorus acquisition efficiency in arbuscular mycorrhizal maize is correlated with the abundance of root‐external hyphae and the accumulation of transcripts encoding PHT1 phosphate transporters

inferredcites →https://doi.org/10.1111/nph.14894openalex-snapshot

Fusarium graminearum: pathogen or endophyte of North American grasses?

inferredcites →https://doi.org/10.1126/science.1092986openalex-snapshot

Medicago truncatula DMI1 Required for Bacterial and Fungal Symbioses in Legumes

inferredcites →https://doi.org/10.1126/science.1093038openalex-snapshot

A Putative Ca 2+ and Calmodulin-Dependent Protein Kinase Required for Bacterial and Fungal Symbioses

inferredcites →https://doi.org/10.1126/science.aae0109openalex-snapshot

Nuclear-localized cyclic nucleotide–gated channels mediate symbiotic calcium oscillations

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/aem.00315-11openalex-snapshot

The Genotype of the Calcium/Calmodulin-Dependent Protein Kinase Gene ( CCaMK ) Determines Bacterial Community Diversity in Rice Roots under Paddy and Upland Field Conditions

inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

inferredcites →https://doi.org/10.1128/aem.66.10.4503-4509.2000openalex-snapshot

Detection and Identification of Bacterial Endosymbionts in Arbuscular Mycorrhizal Fungi Belonging to the Family Gigasporaceae

inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120235openalex-snapshot

Transport and Metabolism in Legume-Rhizobia Symbioses

inferredcites →https://doi.org/10.1186/s40168-018-0445-0openalex-snapshot

Microbial interactions within the plant holobiont

inferredcites →https://doi.org/10.1371/journal.pgen.1002230openalex-snapshot

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

inferredcites →https://doi.org/10.1890/0012-9658(2003)084[0511:caopca]2.0.co;2openalex-snapshot

CANONICAL ANALYSIS OF PRINCIPAL COORDINATES: A USEFUL METHOD OF CONSTRAINED ORDINATION FOR ECOLOGY

inferredcites →https://doi.org/10.3389/fpls.2018.01270openalex-snapshot

Beneficial Services of Arbuscular Mycorrhizal Fungi – From Ecology to Application

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-99-9388-8_18openalex-snapshot

Crop Microbiomes Enhance Antioxidant Defense in Plants

inferred← citeshttps://doi.org/10.1016/j.molp.2019.05.006openalex-snapshot

Systems Biology of Plant-Microbiome Interactions

inferred← citeshttps://doi.org/10.1016/j.tplants.2019.06.008openalex-snapshot

Plant Symbionts Are Engineers of the Plant-Associated Microbiome

inferred← citeshttps://doi.org/10.1038/s41559-019-1063-3openalex-snapshot

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

inferred← citeshttps://doi.org/10.1080/01140671.2025.2458811openalex-snapshot

Revisiting the ecological significance, composition, and functions of plant microbiome: a review

inferred← citeshttps://doi.org/10.1101/740043openalex-snapshot

Symbiotic signalling is at the core of an endophytic Fusarium solani -legume association

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