On the public citation graph

De novo assembly and annotation of Asiatic lion ( Panthera leo persica ) genome

https://doi.org/10.1101/549790
0 signed · 56 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1003s00openalex-snapshot
Using MUMmer to Identify Similar Regions in Large Sequence Sets
inferredcites →https://doi.org/10.1002/j.1538-9235.1996.tb04494.xopenalex-snapshot
Temporal Summation for Grating Patches Detected at Low Light Levels
inferredcites →https://doi.org/10.1002/zoo.1430060202openalex-snapshot
Evidence for African origins of founders of the asiatic lion species survival plan
inferredcites →https://doi.org/10.1016/j.biocon.2011.02.009openalex-snapshot
A conservation success story in the otherwise dire megafauna extinction crisis: The Asiatic lion (Panthera leo persica) of Gir forest
inferredcites →https://doi.org/10.1016/s0042-6989(97)00176-4openalex-snapshot
Diversity of glutamate receptors in the mammalian retina
inferredcites →https://doi.org/10.1016/s0092-8674(01)00453-6openalex-snapshot
Two Splice Variants of the Wilms' Tumor 1 Gene Have Distinct Functions during Sex Determination and Nephron Formation
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1017/s0952523899166100openalex-snapshot
AMPA-selective glutamate receptor subunits GluR2 and GluR4 in the cat retina: An immunocytochemical study
inferredcites →https://doi.org/10.1038/ncomms3433openalex-snapshot
The tiger genome and comparative analysis with lion and snow leopard genomes
inferredcites →https://doi.org/10.1038/nrg2167openalex-snapshot
The evolution of sex-biased genes and sex-biased gene expression
inferredcites →https://doi.org/10.1046/j.1471-8286.2002.00306.xopenalex-snapshot
Development and characterization of novel microsatellite markers in the Asiatic lion (Panthera leo persica)
inferredcites →https://doi.org/10.1073/pnas.84.2.508openalex-snapshot
East African cheetahs: evidence for two population bottlenecks?
inferredcites →https://doi.org/10.1073/pnas.87.2.836openalex-snapshot
DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history.
inferredcites →https://doi.org/10.1074/jbc.m009056200openalex-snapshot
The Human Sex-determining Gene SRY Is a Direct Target of WT1
inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
inferredcites →https://doi.org/10.1089/106652702761034136openalex-snapshot
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp336openalex-snapshot
SOAP2: an improved ultrafast tool for short read alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btq315openalex-snapshot
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt509openalex-snapshot
Infernal 1.1: 100-fold faster RNA homology searches
inferredcites →https://doi.org/10.1093/bioinformatics/btv057openalex-snapshot
NxTrim: optimized trimming of Illumina mate pair reads
inferredcites →https://doi.org/10.1093/bioinformatics/btx721openalex-snapshot
PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences
inferredcites →https://doi.org/10.1093/jn/108.5.773openalex-snapshot
Taurine: An Essential Nutrient for the Cat
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msn067openalex-snapshot
An Improved General Amino Acid Replacement Matrix
inferredcites →https://doi.org/10.1093/molbev/msq303openalex-snapshot
Statistical Properties of the Branch-Site Test of Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msr272openalex-snapshot
The Effects of Alignment Error and Alignment Filtering on the Sitewise Detection of Positive Selection
inferredcites →https://doi.org/10.1093/molbev/msy037openalex-snapshot
Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World’s Rarest Hyena Species, the Brown Hyena
inferredcites →https://doi.org/10.1093/nar/27.11.2369openalex-snapshot
Alignment of whole genomes
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkt1055openalex-snapshot
TreeFam v9: a new website, more species and orthology-on-the-fly
inferredcites →https://doi.org/10.1093/nar/gkw413openalex-snapshot
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025808openalex-snapshot
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040232openalex-snapshot
Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae.
inferredcites →https://doi.org/10.1093/sysbio/19.1.83openalex-snapshot
Methods for Computing Wagner Trees
inferredcites →https://doi.org/10.1101/gad.12.8.1108openalex-snapshot
Inhibition of cellular proliferation by the Wilms tumor suppressor WT1 requires association with the inducible chaperone Hsp70
inferredcites →https://doi.org/10.1101/gad.1422006openalex-snapshot
Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.6380007openalex-snapshot
Initial sequence and comparative analysis of the cat genome
inferredcites →https://doi.org/10.1126/science.1122277openalex-snapshot
The Late Miocene Radiation of Modern Felidae: A Genetic Assessment
inferredcites →https://doi.org/10.1126/science.1158395openalex-snapshot
Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/s13059-015-0837-4openalex-snapshot
Genomic legacy of the African cheetah, Acinonyx jubatus
inferredcites →https://doi.org/10.1186/s13059-016-1071-4openalex-snapshot
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
inferredcites →https://doi.org/10.1186/s13059-016-1090-1openalex-snapshot
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.0020048openalex-snapshot
Protein Family Expansions and Biological Complexity
inferredcites →https://doi.org/10.1371/journal.pone.0046453openalex-snapshot
The Directed Differentiation of Human iPS Cells into Kidney Podocytes
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.7325/galemys.2017.a2openalex-snapshot
Reassessment of the conservation status of the Iberian lynx Lynx pardinus for the IUCN Red List of Threatened Species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s12915-019-0734-5openalex-snapshot
Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.