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The genome of Auriculariopsis ampla sheds light on fruiting body development and wood-decay of bark-inhabiting fungi

https://doi.org/10.1101/550103
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Hydrophobin Gene Expression Affects Hyphal Wall Composition in Schizophyllum commune
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Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
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An endo-β-1,6-glucanase involved in Lentinula edodes fruiting body autolysis
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The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus
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Fruiting body production in basidiomycetes
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Isolation and characterization of a fruiting body-specific exo-β-1,3-glucanase-encoding gene, exg1, from Lentinula edodes
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Thaumatin gene confers resistance to fungal pathogens as well as tolerance to abiotic stresses in transgenic tobacco plants
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Anatomical changes in Syzygium cumuini Linn. wood decayed by two white rot fungi Schizophyllum commune Fries. and Flavodon flavus (Klotzsch) Ryvarden
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A novel cDNA, priBc, encoding a protein with a Zn(II)2Cys6 zinc cluster DNA-binding motif, derived from the basidiomycete Lentinus edodes
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How do Agaricomycetes shape their fruiting bodies? 1. Morphological aspects of development
inferredcites →https://doi.org/10.1016/j.fgb.2007.10.018openalex-snapshot
Hydrophobins Sc3 and Sc4 gene expression in mounds, fruiting bodies and vegetative hyphae of Schizophyllum commune
inferredcites →https://doi.org/10.1016/j.fgb.2007.11.004openalex-snapshot
The exp1 gene essential for pileus expansion and autolysis of the inky cap mushroom Coprinopsis cinerea (Coprinus cinereus) encodes an HMG protein
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Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
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Le.MAPK and its interacting partner, Le.DRMIP, in fruiting body development in Lentinula edodes
inferredcites →https://doi.org/10.1016/j.micres.2018.09.003openalex-snapshot
Blue light exposure and nutrient conditions influence the expression of genes involved in simultaneous hyphal knot formation in Coprinopsis cinerea
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Budding Yeast SKP1 Encodes an Evolutionarily Conserved Kinetochore Protein Required for Cell Cycle Progression
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How a fungus escapes the water to grow into the air
inferredcites →https://doi.org/10.1038/nature06556openalex-snapshot
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
inferredcites →https://doi.org/10.1038/nbt.1643openalex-snapshot
Genome sequence of the model mushroom Schizophyllum commune
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot
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inferredcites →https://doi.org/10.1038/nrg.2017.19openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41598-017-00483-3openalex-snapshot
Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth
inferredcites →https://doi.org/10.1038/s41598-017-15112-2openalex-snapshot
A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus
inferredcites →https://doi.org/10.1038/s41598-018-27318-zopenalex-snapshot
Comparative transcriptome analysis of dikaryotic mycelia and mature fruiting bodies in the edible mushroom Lentinula edodes
inferredcites →https://doi.org/10.1038/srep33640openalex-snapshot
Schizophyllum commune has an extensive and functional alternative splicing repertoire
inferredcites →https://doi.org/10.1042/0264-6021:3500933openalex-snapshot
A novel mechanism of xylan binding by a lectin-like module from Streptomyces lividans xylanase 10A
inferredcites →https://doi.org/10.1073/pnas.0809575106openalex-snapshot
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
inferredcites →https://doi.org/10.1073/pnas.1003391107openalex-snapshot
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea ( Coprinus cinereus )
inferredcites →https://doi.org/10.1073/pnas.1206847109openalex-snapshot
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
inferredcites →https://doi.org/10.1073/pnas.1400592111openalex-snapshot
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
inferredcites →https://doi.org/10.1073/pnas.95.17.9825openalex-snapshot
The Candida albicans KRE9 gene is required for cell wall β-1,6-glucan synthesis and is essential for growth on glucose
inferredcites →https://doi.org/10.1074/jbc.272.3.1514openalex-snapshot
Fungal Galectins, Sequence and Specificity of Two Isolectins from Coprinus cinereus
inferredcites →https://doi.org/10.1074/jbc.m109.076075openalex-snapshot
Identification, Characterization, and Biosynthesis of a Novel N-Glycan Modification in the Fruiting Body of the Basidiomycete Coprinopsis cinerea
inferredcites →https://doi.org/10.1074/jbc.m510163200openalex-snapshot
Glycosylphosphatidylinositol-anchored Fungal Polysaccharide in Aspergillus fumigatus
inferredcites →https://doi.org/10.1074/jbc.m807990200openalex-snapshot
Molecular Mechanisms of Yeast Cell Wall Glucan Remodeling
inferredcites →https://doi.org/10.1080/00275514.2000.12061228openalex-snapshot
Some fungi express β-1,3-glucanases similar to thaumatin-like proteins
inferredcites →https://doi.org/10.1080/17429145.2017.1367042openalex-snapshot
Expression analysis and functional characterization of a pathogen-induced thaumatin-like gene in wheat conferring enhanced resistance to Puccinia triticina
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msv337openalex-snapshot
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities
inferredcites →https://doi.org/10.1093/nar/gkm259openalex-snapshot
WoLF PSORT: protein localization predictor
inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot
The carbohydrate-active enzymes database (CAZy) in 2013
inferredcites →https://doi.org/10.1093/nar/gkt1183openalex-snapshot
MycoCosm portal: gearing up for 1000 fungal genomes
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1093/oxfordjournals.jbchem.a021866openalex-snapshot
Determination of the DNA-Binding Sequences of the Zn(II)2Cys6 Zinc-Cluster-Containing PRIB Protein, Derived from the Basidiomycete Lentinus edodes Gene
inferredcites →https://doi.org/10.1099/00221287-146-8-1841openalex-snapshot
Fruiting body development in Coprinus cinereus: regulated expression of two galectins secreted by a non-classical pathway The GenBank accession number for the sequence reported in this paper is AF130360
inferredcites →https://doi.org/10.1101/349894openalex-snapshot
Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity
inferredcites →https://doi.org/10.1104/pp.106.076679openalex-snapshot
Lentinula edodes tlg1 Encodes a Thaumatin-Like Protein That Is Involved in Lentinan Degradation and Fruiting Body Senescence
inferredcites →https://doi.org/10.1111/1462-2920.14727openalex-snapshot
Laccaria bicolor MiSSP8 is a small‐secreted protein decisive for the establishment of the ectomycorrhizal symbiosis
inferredcites →https://doi.org/10.1111/1567-1364.12011openalex-snapshot
Regulation of genes involved in cell wall synthesis and structure duringUstilago maydisdimorphism
inferredcites →https://doi.org/10.1111/j.1365-2958.2007.05711.xopenalex-snapshot
How to build a fungal fruit body: from uniform cells to specialized tissue
inferredcites →https://doi.org/10.1111/j.1365-2958.2011.07776.xopenalex-snapshot
Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00804.xopenalex-snapshot
SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES
inferredcites →https://doi.org/10.1111/j.1574-6968.1996.tb08347.xopenalex-snapshot
Targeted mutation of the SC3 hydrophobin gene of Schizophyllum commune affects formation of aerial hyphae
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1126/science.1075762openalex-snapshot
The Protein Kinase Complement of the Human Genome
inferredcites →https://doi.org/10.1126/science.1221748openalex-snapshot
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
inferredcites →https://doi.org/10.1128/aem.02103-08openalex-snapshot
NovelCoprinopsis cinereaPolyesterase That Hydrolyzes Cutin and Suberin
inferredcites →https://doi.org/10.1128/aem.02990-16openalex-snapshot
Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis
inferredcites →https://doi.org/10.1128/aem.05581-11openalex-snapshot
Endo-β-1,3-Glucanase GLU1, from the Fruiting Body of Lentinula edodes, Belongs to a New Glycoside Hydrolase Family
inferredcites →https://doi.org/10.1128/mbio.00986-15openalex-snapshot
Cell Wall Remodeling Enzymes Modulate Fungal Cell Wall Elasticity and Osmotic Stress Resistance
inferredcites →https://doi.org/10.1128/mcb.21.11.3609-3615.2001openalex-snapshot
All in the Family: the BTB/POZ, KRAB, and SCAN Domains
inferredcites →https://doi.org/10.1146/annurev.py.32.090194.002213openalex-snapshot
DEVELOPMENTAL REGULATION OF FUNGAL CELL WALL FORMATION
inferredcites →https://doi.org/10.1186/0717-6287-47-30openalex-snapshot
Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii
inferredcites →https://doi.org/10.1186/1471-2164-14-195openalex-snapshot
5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea
inferredcites →https://doi.org/10.1186/1471-2164-15-492openalex-snapshot
Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development
inferredcites →https://doi.org/10.1186/1471-2164-15-613openalex-snapshot
Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source
inferredcites →https://doi.org/10.1186/s12870-018-1297-2openalex-snapshot
Functional analysis of a pathogenesis-related thaumatin-like protein gene TaLr35PR5 from wheat induced by leaf rust fungus
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13068-016-0461-xopenalex-snapshot
Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system
inferredcites →https://doi.org/10.1242/bio.021246openalex-snapshot
TheCoprinopsis cinereaTup1 homologue Cag1 is required for gill formation during fruiting body morphogenesis
inferredcites →https://doi.org/10.1271/bbb.130183openalex-snapshot
Structure and Function of Carbohydrate-Binding Module Families 13 and 42 of Glycoside Hydrolases, Comprising a β-Trefoil Fold
inferredcites →https://doi.org/10.1271/bbb.80213openalex-snapshot
Purification and Characterization of a Novel Exo-β-1,3-1,6-glucanase from the Fruiting Body of the Edible Mushroom Enoki (Flammulina velutipes)
inferredcites →https://doi.org/10.1371/journal.pgen.1006867openalex-snapshot
The ancestral levels of transcription and the evolution of sexual phenotypes in filamentous fungi
inferredcites →https://doi.org/10.1371/journal.pone.0056686openalex-snapshot
Transcriptome and Proteome Exploration to Provide a Resource for the Study of Agrocybe aegerita
inferredcites →https://doi.org/10.1371/journal.pone.0091740openalex-snapshot
De Novo Assembly of Auricularia polytricha Transcriptome Using Illumina Sequencing for Gene Discovery and SSR Marker Identification
inferredcites →https://doi.org/10.1371/journal.pone.0093560openalex-snapshot
Whole Genome and Global Gene Expression Analyses of the Model Mushroom Flammulina velutipes Reveal a High Capacity for Lignocellulose Degradation
inferredcites →https://doi.org/10.1371/journal.pone.0122296openalex-snapshot
A Novel Expansin Protein from the White-Rot Fungus Schizophyllum commune
inferredcites →https://doi.org/10.1371/journal.pone.0123025openalex-snapshot
Transcriptome Analysis and Its Application in Identifying Genes Associated with Fruiting Body Development in Basidiomycete Hypsizygus marmoreus
inferredcites →https://doi.org/10.1371/journal.pone.0141586openalex-snapshot
Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea
inferredcites →https://doi.org/10.1371/journal.pone.0198234openalex-snapshot
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea
inferredcites →https://doi.org/10.1371/journal.ppat.1002706openalex-snapshot
Plasticity of the β-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System
inferredcites →https://doi.org/10.1371/journal.ppat.1002878openalex-snapshot
The Human Cytomegalovirus Assembly Compartment: A Masterpiece of Viral Manipulation of Cellular Processes That Facilitates Assembly and Egress
inferredcites →https://doi.org/10.1515/hfsg.1980.34.2.67openalex-snapshot
Variability of Wood Degrading Enzymes ofSchizophyllum commune
inferredcites →https://doi.org/10.1534/genetics.105.045542openalex-snapshot
An Essential Gene for Fruiting Body Initiation in the Basidiomycete Coprinopsis cinerea Is Homologous to Bacterial Cyclopropane Fatty Acid Synthase Genes
inferredcites →https://doi.org/10.1534/genetics.113.152231openalex-snapshot
A DNA Damage Checkpoint Pathway Coordinates the Division of Dikaryotic Cells in the Ink Cap MushroomCoprinopsis cinerea
inferredcites →https://doi.org/10.2225/vol15-issue5-fulltext-5openalex-snapshot
Characterization of a thermostable extracellular tannase produced under submerged fermentation by Aspergillus ochraceus
inferredcites →https://doi.org/10.2307/3761579openalex-snapshot
Some Fungi Express beta-1,3-Glucanases Similar to Thaumatin-like Proteins
inferredcites →https://doi.org/10.3389/fmicb.2015.01278openalex-snapshot
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins
inferredcites →https://doi.org/10.3389/fmicb.2018.00141openalex-snapshot
Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum
inferredcites →https://doi.org/10.3389/fpls.2014.00769openalex-snapshot
Cerato-platanin family proteins: one function for multiple biological roles?
inferredcites →https://doi.org/10.3390/ijms16047802openalex-snapshot
Mushroom Lectins: Specificity, Structure and Bioactivity Relevant to Human Disease
inferredcites →https://doi.org/10.3852/13-115openalex-snapshot
Distribution and bioinformatic analysis of the cerato-platanin protein family in Dikarya
inferredcites →https://doi.org/10.6090/jarq.44.357openalex-snapshot
Schizophyllum commune as a Ubiquitous Plant Parasite

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1128/aem.00761-19openalex-snapshot
Manipulating the Expression of Small Secreted Protein 1 (Ssp1) Alters Patterns of Development and Metabolism in the White-Rot Fungus Pleurotus ostreatus
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00455openalex-snapshot
Seeking the Roles for Fungal Small-Secreted Proteins in Affecting Saprophytic Lifestyles
inferred← citeshttps://doi.org/10.53846/goediss-9372openalex-snapshot
Unlocking proteomic and ecological heterogeneity between Schizophyllum commune and Trametes versicolor as early sapwood colonizers on wood
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