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Transcriptional dynamics of bread wheat in response to nitrate and phosphate supply reveal functional divergence of genetic factors involved in nitrate and phosphate signaling
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s11103-016-0463-xopenalex-snapshot
Hormones and nitrate: a two-way connection
inferredcites →https://doi.org/10.1016/j.bbagrm.2016.09.003openalex-snapshot
Computational inference of gene regulatory networks: Approaches, limitations and opportunities
inferredcites →https://doi.org/10.1016/j.devcel.2017.05.009openalex-snapshot
Phosphate Starvation-Dependent Iron Mobilization Induces CLE14 Expression to Trigger Root Meristem Differentiation through CLV2/PEPR2 Signaling
inferredcites →https://doi.org/10.1016/j.molp.2015.12.012openalex-snapshot
Complex Regulation of Plant Phosphate Transporters and the Gap between Molecular Mechanisms and Practical Application: What Is Missing?
inferredcites →https://doi.org/10.1016/j.pbi.2014.06.004openalex-snapshot
Nitrogen signalling pathways shaping root system architecture: an update
inferredcites →https://doi.org/10.1016/j.pbi.2017.06.008openalex-snapshot
Food for thought: how nutrients regulate root system architecture
inferredcites →https://doi.org/10.1016/j.plantsci.2013.04.006openalex-snapshot
Arabidopsis thaliana nicotianamine synthase 4 is required for proper response to iron deficiency and to cadmium exposure
inferredcites →https://doi.org/10.1016/j.tplants.2006.07.004openalex-snapshot
Interactions between nitrogen and cytokinin in the regulation of metabolism and development
inferredcites →https://doi.org/10.1016/j.tplants.2010.06.005openalex-snapshot
MYB transcription factors in Arabidopsis
inferredcites →https://doi.org/10.1016/j.tplants.2013.04.006openalex-snapshot
Lateral root development in Arabidopsis: fifty shades of auxin
inferredcites →https://doi.org/10.1016/j.tplants.2014.01.007openalex-snapshot
Shaping a root system: regulating lateral versus primary root growth
inferredcites →https://doi.org/10.1016/j.tplants.2016.07.011openalex-snapshot
Genetic Control of Lateral Root Formation in Cereals
inferredcites →https://doi.org/10.1016/s1360-1385(01)02223-3openalex-snapshot
bZIP transcription factors in Arabidopsis
inferredcites →https://doi.org/10.1016/s1360-1385(98)01311-9openalex-snapshot
Molecular and physiological aspects of nitrate uptake in plants
inferredcites →https://doi.org/10.1038/90831openalex-snapshot
Direct visualization of protein interactions in plant cells
inferredcites →https://doi.org/10.1038/nature01014openalex-snapshot
Agricultural sustainability and intensive production practices
inferredcites →https://doi.org/10.1038/nature15743openalex-snapshot
Managing nitrogen for sustainable development
inferredcites →https://doi.org/10.1038/nature22077openalex-snapshot
Discovery of nitrate–CPK–NLP signalling in central nutrient–growth networks
inferredcites →https://doi.org/10.1038/nbt.1603openalex-snapshot
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/ncomms15300openalex-snapshot
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation
inferredcites →https://doi.org/10.1038/ncomms2650openalex-snapshot
Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants
inferredcites →https://doi.org/10.1038/ncomms7274openalex-snapshot
AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip
inferredcites →https://doi.org/10.1038/ncomms8213openalex-snapshot
Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma
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Salmon provides fast and bias-aware quantification of transcript expression
inferredcites →https://doi.org/10.1038/nrmicro2419openalex-snapshot
Advantages and limitations of current network inference methods
inferredcites →https://doi.org/10.1038/s41467-018-03832-6openalex-snapshot
A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis
inferredcites →https://doi.org/10.1038/s41598-017-03061-9openalex-snapshot
Comprehensive study of excess phosphate response reveals ethylene mediated signaling that negatively regulates plant growth and development
inferredcites →https://doi.org/10.1046/j.1365-3040.2003.01100.xopenalex-snapshot
Effects of phosphate availability on the root system architecture: large‐scale analysis of the natural variation between Arabidopsis accessions
inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00288.xopenalex-snapshot
Functional analysis of regulatory sequences controlling PR‐1 gene expression in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.1108684108openalex-snapshot
Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand
inferredcites →https://doi.org/10.1073/pnas.1404654111openalex-snapshot
SPX1 is a phosphate-dependent inhibitor of PHOSPHATE STARVATION RESPONSE 1 in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.1514598112openalex-snapshot
A vacuolar phosphate transporter essential for phosphate homeostasis in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.1701952114openalex-snapshot
Malate-dependent Fe accumulation is a critical checkpoint in the root developmental response to low phosphate
inferredcites →https://doi.org/10.1073/pnas.1718670115openalex-snapshot
Nitrate modulates stem cell dynamics in Arabidopsis shoot meristems through cytokinins
inferredcites →https://doi.org/10.1074/jbc.m113.482281openalex-snapshot
Arabidopsis Ferritin 1 (AtFer1) Gene Regulation by the Phosphate Starvation Response 1 (AtPHR1) Transcription Factor Reveals a Direct Molecular Link between Iron and Phosphate Homeostasis
inferredcites →https://doi.org/10.1093/aob/mcs285openalex-snapshot
Responses of root architecture development to low phosphorus availability: a review
inferredcites →https://doi.org/10.1093/bioinformatics/8.3.275openalex-snapshot
The rapid generation of mutation data matrices from protein sequences
inferredcites →https://doi.org/10.1093/bioinformatics/bti551openalex-snapshot
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/jxb/ert421openalex-snapshot
It’s time to make changes: modulation of root system architecture by nutrient signals
inferredcites →https://doi.org/10.1093/jxb/eru001openalex-snapshot
Nitrate transport and signalling in Arabidopsis
inferredcites →https://doi.org/10.1093/jxb/eru029openalex-snapshot
Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/mp/ssp086openalex-snapshot
Ubiquitin-Specific Protease 14 (UBP14) Is Involved in Root Responses to Phosphate Deficiency in Arabidopsis
inferredcites →https://doi.org/10.1093/mp/ssr015openalex-snapshot
Transporters Contributing to Iron Trafficking in Plants
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot
MEME SUITE: tools for motif discovery and searching
inferredcites →https://doi.org/10.1093/nar/gkx1126openalex-snapshot
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
inferredcites →https://doi.org/10.1093/nar/gkx1188openalex-snapshot
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
inferredcites →https://doi.org/10.1093/pcp/pcn107openalex-snapshot
Characterization of the TaALMT1 Protein as an Al3+-Activated Anion Channel in Transformed Tobacco (Nicotiana tabacum L.) Cells
inferredcites →https://doi.org/10.1093/pcp/pct007openalex-snapshot
A Nitrate-Inducible GARP Family Gene Encodes an Auto-Repressible Transcriptional Repressor in Rice
inferredcites →https://doi.org/10.1093/pcp/pcx191openalex-snapshot
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index
inferredcites →https://doi.org/10.1093/pcp/pcx209openalex-snapshot
ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index
inferredcites →https://doi.org/10.1094/mpmi-04-12-0078-iaopenalex-snapshot
From Pioneers to Team Players: TGA Transcription Factors Provide a Molecular Link Between Different Stress Pathways
inferredcites →https://doi.org/10.1098/rstb.2011.0234openalex-snapshot
Root system architecture: insights from Arabidopsis and cereal crops
inferredcites →https://doi.org/10.1101/gad.879101openalex-snapshot
COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1104/pp.007468openalex-snapshot
The COBRA Family of Putative GPI-Anchored Proteins in Arabidopsis. A New Fellowship in Expansion
inferredcites →https://doi.org/10.1104/pp.010331openalex-snapshot
Symbiotic Nitrogen Fixation and Phosphorus Acquisition. Plant Nutrition in a World of Declining Renewable Resources
inferredcites →https://doi.org/10.1104/pp.103.021253openalex-snapshot
Microarray Analysis of the Nitrate Response in Arabidopsis Roots and Shoots Reveals over 1,000 Rapidly Responding Genes and New Linkages to Glucose, Trehalose-6-Phosphate, Iron, and Sulfate Metabolism
inferredcites →https://doi.org/10.1104/pp.104.047019openalex-snapshot
Genome-Wide Reprogramming of Primary and Secondary Metabolism, Protein Synthesis, Cellular Growth Processes, and the Regulatory Infrastructure of Arabidopsis in Response to Nitrogen
inferredcites →https://doi.org/10.1104/pp.106.082586openalex-snapshot
Mutations in Arabidopsis Yellow Stripe-Like1 and Yellow Stripe-Like3 Reveal Their Roles in Metal Ion Homeostasis and Loading of Metal Ions in Seeds
inferredcites →https://doi.org/10.1104/pp.106.087262openalex-snapshot
Combining Expression and Comparative Evolutionary Analysis. The COBRA Gene Family
inferredcites →https://doi.org/10.1104/pp.108.119636openalex-snapshot
Novel Properties of the Wheat Aluminum Tolerance Organic Acid Transporter (TaALMT1) Revealed by Electrophysiological Characterization in Xenopus Oocytes: Functional and Structural Implications
inferredcites →https://doi.org/10.1104/pp.113.218453openalex-snapshot
Plasticity of the Arabidopsis Root System under Nutrient Deficiencies
inferredcites →https://doi.org/10.1104/pp.114.244541openalex-snapshot
Root Architecture Responses: In Search of Phosphate
inferredcites →https://doi.org/10.1104/pp.116.2.447openalex-snapshot
Phosphorus Uptake by Plants: From Soil to Cell
inferredcites →https://doi.org/10.1104/pp.119.3.1107openalex-snapshot
Nicotianamine Chelates Both FeIII and FeII. Implications for Metal Transport in Plants1
inferredcites →https://doi.org/10.1104/pp.15.01005openalex-snapshot
OsSPX-MFS3, a vacuolar phosphate efflux transporter, is involved in maintaining Pi homeostasis in rice
inferredcites →https://doi.org/10.1104/pp.17.00568openalex-snapshot
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation
inferredcites →https://doi.org/10.1104/pp.17.00821openalex-snapshot
Iron-Nicotianamine Transporters Are Required for Proper Long Distance Iron Signaling
inferredcites →https://doi.org/10.1104/pp.18.00217openalex-snapshot
EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture
inferredcites →https://doi.org/10.1105/tpc.001628openalex-snapshot
In Vivo Interaction between NPR1 and Transcription Factor TGA2 Leads to Salicylic Acid–Mediated Gene Activation in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.010256openalex-snapshot
Role of Nicotianamine in the Intracellular Delivery of Metals and Plant Reproductive Development
inferredcites →https://doi.org/10.1105/tpc.1.2.229openalex-snapshot
Transcription, organization, and sequence of an auxin-regulated gene cluster in soybean.
inferredcites →https://doi.org/10.1105/tpc.109.067041openalex-snapshot
Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.112.099077openalex-snapshot
Nicotianamine Functions in the Phloem-Based Transport of Iron to Sink Organs, in Pollen Development and Pollen Tube Growth in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.112.240212openalex-snapshot
Nicotianamine in Zinc and Iron Homeostasis
inferredcites →https://doi.org/10.1105/tpc.113.117325openalex-snapshot
Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery
inferredcites →https://doi.org/10.1105/tpc.113.122101openalex-snapshot
Analysis of the Root System Architecture of Arabidopsis Provides a Quantitative Readout of Crosstalk between Nutritional Signals
inferredcites →https://doi.org/10.1105/tpc.12.8.1491openalex-snapshot
Genomic Analysis of a Nutrient Response in Arabidopsis Reveals Diverse Expression Patterns and Novel Metabolic and Potential Regulatory Genes Induced by Nitrate
inferredcites →https://doi.org/10.1105/tpc.17.00810openalex-snapshot
Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily
inferredcites →https://doi.org/10.1111/j.1365-3040.2007.01734.xopenalex-snapshot
Increased expression of the MYB‐related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/j.1365-3040.2009.02040.xopenalex-snapshot
Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03460.xopenalex-snapshot
Characterization of a sub‐family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03695.xopenalex-snapshot
The nodule inception‐like protein 7 modulates nitrate sensing and metabolism in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1744-7909.2009.00819.xopenalex-snapshot
Overexpressing HRS1 Confers Hypersensitivity to Low Phosphate‐Elicited Inhibition of Primary Root Growth in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/jipb.12453openalex-snapshot
Long‐distance nitrate signaling displays cytokinin dependent and independent branches
inferredcites →https://doi.org/10.1111/jipb.12454openalex-snapshot
Fine‐tuning by strigolactones of root response to low phosphate
inferredcites →https://doi.org/10.1111/pbi.12651openalex-snapshot
The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias
inferredcites →https://doi.org/10.1111/tpj.12618openalex-snapshot
Systems approach identifies TGA 1 and TGA 4 transcription factors as important regulatory components of the nitrate response of A rabidopsis thaliana roots
inferredcites →https://doi.org/10.1126/science.1250091openalex-snapshot
Genome interplay in the grain transcriptome of hexaploid bread wheat
inferredcites →https://doi.org/10.1126/science.1250092openalex-snapshot
Ancient hybridizations among the ancestral genomes of bread wheat
inferredcites →https://doi.org/10.1126/science.aar7191openalex-snapshot
Shifting the limits in wheat research and breeding using a fully annotated reference genome
inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103849openalex-snapshot
Signaling Network in Sensing Phosphate Availability in Plants
inferredcites →https://doi.org/10.1146/annurev.pp.24.060173.001301openalex-snapshot
Phosphate Pools, Phosphate Transport, and Phosphate Availability
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2105-6-227openalex-snapshot
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/1471-2164-9-488openalex-snapshot
BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
inferredcites →https://doi.org/10.1186/gb-2010-11-12-r123openalex-snapshot
Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.149344openalex-snapshot
Cytokinin signaling in plant development
inferredcites →https://doi.org/10.1371/journal.pgen.1002021openalex-snapshot
Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis
inferredcites →https://doi.org/10.1371/journal.pone.0012776openalex-snapshot
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
inferredcites →https://doi.org/10.14348/molcells.2017.0192openalex-snapshot
Cross-talk between Phosphate Starvation and Other Environmental Stress Signaling Pathways in Plants
inferredcites →https://doi.org/10.2307/1930910openalex-snapshot
The Edaphic Factor in Plant Ecology With a Special Note on Soil Phosphates
inferredcites →https://doi.org/10.3389/fpls.2015.00290openalex-snapshot
Integration of P, S, Fe, and Zn nutrition signals in Arabidopsis thaliana: potential involvement of PHOSPHATE STARVATION RESPONSE 1 (PHR1)
inferredcites →https://doi.org/10.3389/fpls.2017.01697openalex-snapshot
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s11427-022-2178-7openalex-snapshot
Wheat genomic study for genetic improvement of traits in China
inferred← citeshttps://doi.org/10.1016/j.tplants.2019.06.006openalex-snapshot
A Roadmap for Lowering Crop Nitrogen Requirement
inferred← citeshttps://doi.org/10.1038/s41477-024-01851-4openalex-snapshot
Co-option of plant gene regulatory network in nutrient responses during terrestrialization
inferred← citeshttps://doi.org/10.1111/nph.16627openalex-snapshot
Gene regulatory network and its constituent transcription factors that control nitrogen‐deficiency responses in rice
inferred← citeshttps://doi.org/10.1186/s12870-021-02997-5openalex-snapshot
Low nitrogen availability inhibits the phosphorus starvation response in maize (Zea mays ssp. mays L.)
inferred← citeshttps://doi.org/10.64898/2026.03.18.712634openalex-snapshot
Comparative cross-species transcriptomic analysis identifies new candidates of Pooideae nitrate response
inferred← citeshttps://doi.org/10.70675/a49926b5zc32fz49c6zb69bze2aa707cbdbeopenalex-snapshot
Molecular deciphering of nitrate response in Pooideae species
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