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Fastq-pair: efficient synchronization of paired-end fastq files
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
inferredcites →https://doi.org/10.1093/nar/gkp1137openalex-snapshot
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1099/mgen.0.000624openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.03.31.018945openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2020.09.23.310516openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.12.14.520463openalex-snapshot
Processing and evaluating the quality of genome-wide nascent transcription profiling libraries
inferred← citeshttps://doi.org/10.1101/2023.11.25.568645openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.07.01.601610openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.07.31.606100openalex-snapshot
snRNA-seq analysis of the moss Physcomitrium patens reveals a conserved cytokinin-ESR module promoting pluripotent stem cell identity
inferred← citeshttps://doi.org/10.1101/2024.10.31.621412openalex-snapshot
The microbiome diversifies N -acyl lipid pools - including short-chain fatty acid-derived compounds
inferred← citeshttps://doi.org/10.1101/2024.12.11.24318846openalex-snapshot
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Intra-host genomic variation of Haemophilus influenzae isolates from asymptomatic nasopharyngeal carriers involves genes encoding proteins with diverse inferred functions
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inferred← citeshttps://doi.org/10.1111/gbi.12461openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12864-025-12137-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12866-025-04274-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s40168-021-01082-1openalex-snapshot
Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
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House dust microbiome differentiation and phage-mediated antibiotic resistance and virulence dissemination in the presence of endocrine-disrupting chemicals and pharmaceuticals
inferred← citeshttps://doi.org/10.12688/f1000research.51494.1openalex-snapshot
The National Ecological Observatory Network’s soil metagenomes: assembly and basic analysis
inferred← citeshttps://doi.org/10.1371/journal.pone.0294013openalex-snapshot
Differential gene expression between viruliferous and non-viruliferous Schizaphis graminum (Rondani)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4205907/v1openalex-snapshot
Chronic exposure to polycyclic aromatic hydrocarbons is associated with alterations in skin virome composition and increased virus–host coevolution
inferred← citeshttps://doi.org/10.3389/978-2-8325-4590-4openalex-snapshot
One Health Surveillance in Practice: Experiences of Integration among Human Health, Animal Health, Environmental Health, and Food Safety Sectors
inferred← citeshttps://doi.org/10.3389/fcimb.2025.1532257openalex-snapshot
Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves
inferred← citeshttps://doi.org/10.3389/fmicb.2020.560336openalex-snapshot
Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses
inferred← citeshttps://doi.org/10.3389/fpls.2022.994679openalex-snapshot
Genome-wide identification and adaptive evolution of CesA/Csl superfamily among species with different life forms in Orchidaceae
inferred← citeshttps://doi.org/10.3389/fpubh.2023.1151568openalex-snapshot
IRIDA-ARIES Genomics, a key player in the One Health surveillance of diseases caused by infectious agents in Italy
inferred← citeshttps://doi.org/10.3390/ani14202947openalex-snapshot
Comparative Transcriptome Analysis of Bovine, Porcine, and Sheep Muscle Using Interpretable Machine Learning Models
inferred← citeshttps://doi.org/10.3390/electronics11111783openalex-snapshot
SFQ: Constructing and Querying a Succinct Representation of FASTQ Files
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Shotgun Metagenome Analysis of Two Schizaphis graminum Biotypes over Time With and Without Carried Cereal Yellow Dwarf Virus
inferred← citeshttps://doi.org/10.54645/mffr36805openalex-snapshot
Genomics and metabolomics-based assessment of the biosynthetic potential of the sponge-associated microorganism Streptomyces cacaoi strain R2A-843A from the Philippines
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185852openalex-snapshot
Additional file 1 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185855openalex-snapshot
Additional file 2 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185858openalex-snapshot
Additional file 3 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185867openalex-snapshot
Additional file 6 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.6084/m9.figshare.13185870openalex-snapshot
Additional file 7 of Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
inferred← citeshttps://doi.org/10.64898/2026.05.24.727565openalex-snapshot
Microbiota-derived TMAO links PM 2.5 exposure to cognitive impairment: A gut–liver–brain axis
inferred← citeshttps://doi.org/10.7717/peerj.12749openalex-snapshot
Genome survey sequencing of the phyto-parasitic nematode Hoplolaimus galeatus
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