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ntEdit: scalable genome assembly polishing

https://doi.org/10.1101/565374
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/s41587-018-0004-zopenalex-snapshot
Errors in long-read assemblies can critically affect protein prediction
inferredcites →https://doi.org/10.1038/s41587-018-0005-yopenalex-snapshot
Reply to ‘Errors in long-read assemblies can critically affect protein prediction’
inferredcites →https://doi.org/10.1093/bioinformatics/btt178openalex-snapshot
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/bty266openalex-snapshot
Versatile genome assembly evaluation with QUAST-LG
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot
Fast and accurate de novo genome assembly from long uncorrected reads
inferredcites →https://doi.org/10.1111/tpj.12886openalex-snapshot
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
inferredcites →https://doi.org/10.1186/s40246-016-0068-0openalex-snapshot
A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.01.009openalex-snapshot
Establishment of an eHAP1 human haploid cell line hybrid reference genome assembled from short and long reads
inferred← citeshttps://doi.org/10.1093/bioadv/vbaf287openalex-snapshot
ntRoot: computational inference of human ancestry at scale from genomic data
inferred← citeshttps://doi.org/10.1101/2019.12.19.882506openalex-snapshot
HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
inferred← citeshttps://doi.org/10.1101/2020.11.02.365809openalex-snapshot
ntHits: de novo repeat identification of genomics data using a streaming approach
inferred← citeshttps://doi.org/10.1101/840447openalex-snapshot
WENGAN: Efficient and high quality hybrid de novo assembly of human genomes
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