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A low-cost, open-source framework for tracking and behavioural analysis of animals in aquatic ecosystems

https://doi.org/10.1101/571232
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Fish Cognition and Behaviour
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Topographic structure from motion: a new development in photogrammetric measurement
inferredcites →https://doi.org/10.1007/978-3-319-46487-9_31openalex-snapshot
Pixelwise View Selection for Unstructured Multi-View Stereo
inferredcites →https://doi.org/10.1016/j.cub.2010.04.022openalex-snapshot
The shadow of the future affects cooperation in a cleaner fish
inferredcites →https://doi.org/10.1016/j.cub.2017.11.058openalex-snapshot
Stochasticity, individuality and behavior
inferredcites →https://doi.org/10.1016/j.geomorph.2012.08.021openalex-snapshot
‘Structure-from-Motion’ photogrammetry: A low-cost, effective tool for geoscience applications
inferredcites →https://doi.org/10.1016/j.icesjms.2004.07.004openalex-snapshot
Ultrasonic tracking reveals multiple behavioural modes of snapper (Pagrus auratus) in a temperate no-take marine reserve
inferredcites →https://doi.org/10.1016/j.jembe.2015.05.005openalex-snapshot
Ecology of the Ocean Sunfish, Mola mola, in the southern California Current System
inferredcites →https://doi.org/10.1016/j.marpolbul.2018.05.064openalex-snapshot
Marine conservation in Oceania: Past, present, and future
inferredcites →https://doi.org/10.1016/j.neuron.2014.09.005openalex-snapshot
Toward a Science of Computational Ethology
inferredcites →https://doi.org/10.1016/j.neuron.2015.11.031openalex-snapshot
Mapping Sub-Second Structure in Mouse Behavior
inferredcites →https://doi.org/10.1016/j.tree.2013.06.002openalex-snapshot
Reality mining of animal social systems
inferredcites →https://doi.org/10.1016/j.tree.2015.07.005openalex-snapshot
From Individuals to Groups and Back: The Evolutionary Implications of Group Phenotypic Composition
inferredcites →https://doi.org/10.1016/j.tree.2016.02.015openalex-snapshot
Key Questions in Marine Megafauna Movement Ecology
inferredcites →https://doi.org/10.1017/cbo9780511811685openalex-snapshot
Multiple View Geometry in Computer Vision
inferredcites →https://doi.org/10.1038/nature08891openalex-snapshot
Hierarchical group dynamics in pigeon flocks
inferredcites →https://doi.org/10.1038/nmeth.2281openalex-snapshot
JAABA: interactive machine learning for automatic annotation of animal behavior
inferredcites →https://doi.org/10.1038/s41567-018-0093-0openalex-snapshot
Ethology as a physical science
inferredcites →https://doi.org/10.1038/s41592-018-0234-5openalex-snapshot
Fast animal pose estimation using deep neural networks
inferredcites →https://doi.org/10.1038/s41592-018-0308-4openalex-snapshot
Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data
inferredcites →https://doi.org/10.1073/pnas.0606777104openalex-snapshot
Smelling home can prevent dispersal of reef fish larvae
inferredcites →https://doi.org/10.1088/1478-3975/14/1/015002openalex-snapshot
Systematic exploration of unsupervised methods for mapping behavior
inferredcites →https://doi.org/10.1093/biosci/biv018openalex-snapshot
Dynamic Ocean Management: Identifying the Critical Ingredients of Dynamic Approaches to Ocean Resource Management
inferredcites →https://doi.org/10.1098/rsbl.2014.1054openalex-snapshot
The sensory ecology of adaptive landscapes
inferredcites →https://doi.org/10.1098/rsif.2014.0672openalex-snapshot
Mapping the stereotyped behaviour of freely moving fruit flies
inferredcites →https://doi.org/10.1098/rstb.2017.0005openalex-snapshot
Challenges and solutions for studying collective animal behaviour in the wild
inferredcites →https://doi.org/10.1098/rstb.2017.0011openalex-snapshot
Synchronization, coordination and collective sensing during thermalling flight of freely migrating white storks
inferredcites →https://doi.org/10.1109/cvpr.2016.445openalex-snapshot
Structure-from-Motion Revisited
inferredcites →https://doi.org/10.1109/cvpr.2018.00416openalex-snapshot
Lions and Tigers and Bears: Capturing Non-rigid, 3D, Articulated Shape from Images
inferredcites →https://doi.org/10.1109/iccv.2017.322openalex-snapshot
Mask R-CNN
inferredcites →https://doi.org/10.1111/1365-2656.12418openalex-snapshot
Constructing, conducting and interpreting animal social network analysis
inferredcites →https://doi.org/10.1111/ecog.03531openalex-snapshot
Where the wild birds go: explaining the differences in migratory destinations across terrestrial bird species
inferredcites →https://doi.org/10.1111/j.1469-185x.2007.00030.xopenalex-snapshot
The behaviour and ecology of the zebrafish, Danio rerio
inferredcites →https://doi.org/10.1126/science.aaa2478openalex-snapshot
Terrestrial animal tracking as an eye on life and planet
inferredcites →https://doi.org/10.1126/science.aac9180openalex-snapshot
Protected areas and global conservation of migratory birds
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145045openalex-snapshot
New Insights into Pelagic Migrations: Implications for Ecology and Conservation
inferredcites →https://doi.org/10.1242/jeb.142281openalex-snapshot
Machine vision methods for analyzing social interactions
inferredcites →https://doi.org/10.1371/journal.pbio.1001127openalex-snapshot
How Many Species Are There on Earth and in the Ocean?
inferredcites →https://doi.org/10.1371/journal.pbio.3000021openalex-snapshot
If a fish can pass the mark test, what are the implications for consciousness and self-awareness testing in animals?
inferredcites →https://doi.org/10.2307/1311807openalex-snapshot
Coastal-Zone Biodiversity Patterns
inferredcites →https://doi.org/10.2307/1934228openalex-snapshot
Site Fixity in the Caribbean Green Turtle
inferredcites →https://doi.org/10.3354/esr00063openalex-snapshot
Biotelemetry and biologging in endangered species research and animal conservation: relevance to regional, national, and IUCN Red List threat assessments
inferredcites →https://doi.org/10.3390/drones2040037openalex-snapshot
Drone-Based High-Resolution Tracking of Aquatic Vertebrates
inferredcites →https://doi.org/10.3390/rs10121912openalex-snapshot
Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry
inferredcites →https://doi.org/10.3390/rs71215859openalex-snapshot
Accuracy and Precision of Habitat Structural Complexity Metrics Derived from Underwater Photogrammetry
inferredcites →https://doi.org/10.48550/arxiv.1712.09005openalex-snapshot
Efficient Algorithms for t-distributed Stochastic Neighborhood Embedding
inferredcites →https://doi.org/10.5860/choice.49-3864openalex-snapshot
Fish cognition and behavior
inferredcites →https://doi.org/10.7554/elife.19505openalex-snapshot
Habitat and social factors shape individual decisions and emergent group structure during baboon collective movement

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-94-024-2080-7_16openalex-snapshot
Cichlids as a Model System for Studying Social Behaviour and Evolution
inferred← citeshttps://doi.org/10.1073/pnas.2000158117openalex-snapshot
Behavioral traits that define social dominance are the same that reduce social influence in a consensus task
inferred← citeshttps://doi.org/10.1080/24705357.2025.2608335openalex-snapshot
Quantifying fish posture and fine-scale movement in flowing water: an enriching approach for ecohydraulic experimentation
inferred← citeshttps://doi.org/10.7554/elife.47994openalex-snapshot
DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning
inferred← citeshttps://doi.org/10.7554/elife.64000openalex-snapshot
TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields
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