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Evolutionary patterns of the chimerical retrogenes in Oryza

https://doi.org/10.1101/573501
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method
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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
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Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
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Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages
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Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
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Computational Identification of 69 Retroposons in Arabidopsis
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Genetic Dissection ofVerticilliumWilt Resistance Mediated by Tomato Ve1
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High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes
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A new look at the statistical model identification
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A dynamic gene expression atlas covering the entire life cycle of rice
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Duplication and DNA segmental loss in the rice genome: implications for diploidization
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Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila
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Phylogenomic analysis of natural selection pressure in Streptococcus genomes
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Long terminal repeat retrotransposons of Oryza sativa
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Emergence of Young Human Genes after a Burst of Retroposition in Primates
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Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
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Origin and Evolution of a Chimeric Fusion Gene in Drosophila subobscura, D. madeirensis and D. guancheSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY874360, AY874361, AY874362, AY874363, AY874364, AY874365, AY874366, AY874367,…
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A Novel Chimeric Gene, siren , With Retroposed Promoter Sequence in the Drosophila bipectinata Complex
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Patterns of Amino Acid Evolution in the Drosophila ananassae Chimeric Gene, siren, Parallel Those of Other Adh-Derived Chimeras
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Formation and Longevity of Chimeric and Duplicate Genes inDrosophila melanogaster
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