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Publicly available transcriptomes provide the opportunity for dual RNA-Seq meta-analysis in Plasmodium infection
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Meta‐Analysis in Medical Research
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Primer on the Gene Ontology
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Serum laminin and basic fibroblast growth factor concentrations in patients with complicatedPlasmodium falciparum malaria
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High incidence of profound biotinidase deficiency detected in newborn screening blood spots in the Somalian population in Minnesota
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Origin of reactive oxygen species in erythrocytes infected with Plasmodium falciparum
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Metabolic modeling helps interpret transcriptomic changes during malaria
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The calcium signaling toolkit of the Apicomplexan parasites Toxoplasma gondii and Plasmodium spp
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Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes
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Genome-wide Functional Analysis of Plasmodium Protein Phosphatases Reveals Key Regulators of Parasite Development and Differentiation
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Monocyte-Derived CD11c+ Cells Acquire Plasmodium from Hepatocytes to Prime CD8 T Cell Immunity to Liver-Stage Malaria
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A Dynamin Is Required for the Biogenesis of Secretory Organelles in Toxoplasma gondii
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The proteasome of malaria parasites: A multi-stage drug target for chemotherapeutic intervention?
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Malaria systems immunology: Plasmodium vivax induces tolerance during primary infection through dysregulation of neutrophils and dendritic cells
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Vacuolar protein sorting mechanisms in apicomplexan parasites
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Protein Degradation Systems as Antimalarial Therapeutic Targets
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Novel approaches to whole sporozoite vaccination against malaria
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Odorant Receptor Localization to Olfactory Cilia Is Mediated by ODR-4, a Novel Membrane-Associated Protein
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Calcium Homeostasis and Signaling in the Blood-stage Malaria Parasite
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Functional transcriptomes: comparative analysis of biological pathways and processes in eukaryotes to infer genetic networks among transcripts
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Vector transmission regulates immune control of Plasmodium virulence
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Structure- and function-based design of Plasmodium-selective proteasome inhibitors
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Orchestrating high-throughput genomic analysis with Bioconductor
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RNA-Seq: a revolutionary tool for transcriptomics
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Dual RNA-seq of pathogen and host
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Artemisinin kills malaria parasites by damaging proteins and inhibiting the proteasome
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Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection
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Malaria parasites regulate intra-erythrocytic development duration via serpentine receptor 10 to coordinate with host rhythms
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RNA sequencing: the teenage years
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c-Maf controls immune responses by regulating disease-specific gene networks and repressing IL-2 in CD4+ T cells
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Characterization of P. vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms
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Host factors that modify Plasmodium falciparum adhesion to endothelial receptors
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Characterization of the 26S proteasome network in Plasmodium falciparum
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Transcriptomic evidence for modulation of host inflammatory responses during febrile Plasmodium falciparum malaria
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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
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Atypical activation of dendritic cells by Plasmodium falciparum
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Host biotin is required for liver stage development in malaria parasites
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A Sporozoite- and Liver Stage-expressed Tryptophan-rich Protein Plays an Auxiliary Role in Plasmodium Liver Stage Development and Is a Potential Vaccine Candidate
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Development of whole sporozoite malaria vaccines
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An ensemble of specifically targeted proteins stabilizes cortical microtubules in the human parasiteToxoplasma gondii
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Fewer permutations, more accurate P -values
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data
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Genes involved in host–parasite interactions can be revealed by their correlated expression
inferredcites →https://doi.org/10.1093/nar/gkz662openalex-snapshot
Malaria.tools—comparative genomic and transcriptomic database for Plasmodium species
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Advantages and disadvantages of the meta-analysis approach
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Profiling gene expression of the host response to a Plasmodium vivax irradiated sporozoite immunization and infectious challenge
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Protein ubiquitylation is essential for the schizont to merozoite transition in Plasmodium falciparum blood-stage development
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1101/gr.158980.113openalex-snapshot
Interactive transcriptome analysis of malaria patients and infectingPlasmodium falciparum
inferredcites →https://doi.org/10.1101/gr.1910904openalex-snapshot
Coexpression Analysis of Human Genes Across Many Microarray Data Sets
inferredcites →https://doi.org/10.1109/tvcg.2014.2346248openalex-snapshot
UpSet: Visualization of Intersecting Sets
inferredcites →https://doi.org/10.1111/j.1365-2958.2009.07026.xopenalex-snapshot
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
inferredcites →https://doi.org/10.1111/j.1469-8137.1912.tb05611.xopenalex-snapshot
THE DISTRIBUTION OF THE FLORA IN THE ALPINE ZONE. 1
inferredcites →https://doi.org/10.1126/science.1087447openalex-snapshot
A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
inferredcites →https://doi.org/10.1126/science.1241800openalex-snapshot
Protection Against Malaria by Intravenous Immunization with a Nonreplicating Sporozoite Vaccine
inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot
Tissue-based map of the human proteome
inferredcites →https://doi.org/10.1126/science.aap7847openalex-snapshot
Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis
inferredcites →https://doi.org/10.1126/science.aax4735openalex-snapshot
A Kelch13-defined endocytosis pathway mediates artemisinin resistance in malaria parasites
inferredcites →https://doi.org/10.1126/scitranslmed.aar3619openalex-snapshot
Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria
inferredcites →https://doi.org/10.1128/ec.00082-13openalex-snapshot
Novel Thioredoxin-Like Proteins Are Components of a Protein Complex Coating the Cortical Microtubules of Toxoplasma gondii
inferredcites →https://doi.org/10.1186/1471-2105-14-19openalex-snapshot
SRAdb: query and use public next-generation sequencing data from within R
inferredcites →https://doi.org/10.1186/1752-0509-9-s4-s1openalex-snapshot
Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments
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An apology for orthologs - or brave new memes.
inferredcites →https://doi.org/10.1186/s12864-020-06787-5openalex-snapshot
Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.12688/wellcomeopenres.14797.1openalex-snapshot
Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern
inferredcites →https://doi.org/10.12688/wellcomeopenres.14797.2openalex-snapshot
Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern
inferredcites →https://doi.org/10.1371/journal.pbio.0000005openalex-snapshot
The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum
inferredcites →https://doi.org/10.1371/journal.pbio.1002132openalex-snapshot
Targeting the Cell Stress Response of Plasmodium falciparum to Overcome Artemisinin Resistance
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Software for Computing and Annotating Genomic Ranges
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An ER Complex of ODR-4 and ODR-8/Ufm1 Specific Protease 2 Promotes GPCR Maturation by a Ufm1-Independent Mechanism
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Transcription Profiling of Malaria-Naïve and Semi-immune Colombian Volunteers in a Plasmodium vivax Sporozoite Challenge
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Sequestration and Tissue Accumulation of Human Malaria Parasites: Can We Learn Anything from Rodent Models of Malaria?
inferredcites →https://doi.org/10.1371/journal.ppat.1006033openalex-snapshot
Resolving host–pathogen interactions by dual RNA-seq
inferredcites →https://doi.org/10.1371/journal.ppat.1007512openalex-snapshot
A unique dynamin-related protein is essential for mitochondrial fission in Toxoplasma gondii
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Covalent Plasmodium falciparum-selective proteasome inhibitors exhibit a low propensity for generating resistance in vitro and synergize with multiple antimalarial agents
inferredcites →https://doi.org/10.1371/journal.ppat.1008482openalex-snapshot
Insights into the intracellular localization, protein associations and artemisinin resistance properties of Plasmodium falciparum K13
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Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn
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R: A Language and Environment for Statistical Computing
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Stress-Induced Accumulation of DcAOX1 and DcAOX2a Transcripts Coincides with Critical Time Point for Structural Biomass Prediction in Carrot Primary Cultures (Daucus carota L.)
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A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction Pathways
inferredcites →https://doi.org/10.3389/fgene.2019.01357openalex-snapshot
A Bipartite Network Module-Based Project to Predict Pathogen–Host Association
inferredcites →https://doi.org/10.3389/fimmu.2018.02888openalex-snapshot
The Rough Guide to Monocytes in Malaria Infection
inferredcites →https://doi.org/10.3389/fmicb.2019.00127openalex-snapshot
The Selection of a Hepatocyte Cell Line Susceptible to Plasmodium falciparum Sporozoite Invasion That Is Associated With Expression of Glypican-3
inferredcites →https://doi.org/10.3390/molecules25245949openalex-snapshot
Plasmodial Kinase Inhibitors Targeting Malaria: Recent Developments
inferredcites →https://doi.org/10.4049/jimmunol.148.6.1635openalex-snapshot
Regulation of the expression of ICAM-1 on human monocytes and monocytic tumor cell lines
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A comparative transcriptomic analysis of replicating and dormant liver stages of the relapsing malaria parasite Plasmodium cynomolgi
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inferred← citeshttps://doi.org/10.1101/2020.11.24.396317openalex-snapshot
Immunogenetic response to a malaria-like parasite in a wild primate
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