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Three-dimensional genome reorganization during mouse spermatogenesis

https://doi.org/10.1101/585281
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.bbagrm.2013.08.004openalex-snapshot
Chromatin dynamics during spermiogenesis
inferredcites →https://doi.org/10.1016/j.bbagrm.2018.10.016openalex-snapshot
m6A mRNA modification regulates mammalian spermatogenesis
inferredcites →https://doi.org/10.1016/j.cell.2013.02.016openalex-snapshot
X-Inactivation, Imprinting, and Long Noncoding RNAs in Health and Disease
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.04.004openalex-snapshot
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
inferredcites →https://doi.org/10.1016/j.cell.2016.10.024openalex-snapshot
Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
inferredcites →https://doi.org/10.1016/j.cell.2017.05.004openalex-snapshot
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
inferredcites →https://doi.org/10.1016/j.cell.2017.06.029openalex-snapshot
3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis
inferredcites →https://doi.org/10.1016/j.cell.2017.09.001openalex-snapshot
Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate
inferredcites →https://doi.org/10.1016/j.cell.2017.09.026openalex-snapshot
Cohesin Loss Eliminates All Loop Domains
inferredcites →https://doi.org/10.1016/j.cell.2017.11.008openalex-snapshot
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
inferredcites →https://doi.org/10.1016/j.cell.2018.05.024openalex-snapshot
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
inferredcites →https://doi.org/10.1016/j.cell.2018.07.047openalex-snapshot
Transcription Elongation Can Affect Genome 3D Structure
inferredcites →https://doi.org/10.1016/j.celrep.2015.10.070openalex-snapshot
H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis
inferredcites →https://doi.org/10.1016/j.cels.2015.07.012openalex-snapshot
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
inferredcites →https://doi.org/10.1016/j.febslet.2015.08.044openalex-snapshot
Structural and functional diversity of Topologically Associating Domains
inferredcites →https://doi.org/10.1016/j.gpb.2017.01.001openalex-snapshot
GSA: Genome Sequence Archive
inferredcites →https://doi.org/10.1016/j.mce.2007.03.001openalex-snapshot
SP1 transcription factors in male germ cell development and differentiation
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.stem.2014.04.006openalex-snapshot
Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis
inferredcites →https://doi.org/10.1038/nature09869openalex-snapshot
Genome-wide analysis reveals novel molecular features of mouse recombination hotspots
inferredcites →https://doi.org/10.1038/nature11049openalex-snapshot
Spatial partitioning of the regulatory landscape of the X-inactivation centre
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature14450openalex-snapshot
Condensin-driven remodelling of X chromosome topology during dosage compensation
inferredcites →https://doi.org/10.1038/nature16490openalex-snapshot
Insulator dysfunction and oncogene activation in IDH mutant gliomas
inferredcites →https://doi.org/10.1038/nature21411openalex-snapshot
Complex multi-enhancer contacts captured by genome architecture mapping
inferredcites →https://doi.org/10.1038/nature23263openalex-snapshot
Allelic reprogramming of 3D chromatin architecture during early mammalian development
inferredcites →https://doi.org/10.1038/nature24281openalex-snapshot
Two independent modes of chromatin organization revealed by cohesin removal
inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot
GREAT improves functional interpretation of cis-regulatory regions
inferredcites →https://doi.org/10.1038/nbt.1754openalex-snapshot
Integrative genomics viewer
inferredcites →https://doi.org/10.1038/ncomms2995openalex-snapshot
Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nmeth.4325openalex-snapshot
Comparison of computational methods for Hi-C data analysis
inferredcites →https://doi.org/10.1038/nrg3663openalex-snapshot
CTCF: an architectural protein bridging genome topology and function
inferredcites →https://doi.org/10.1038/srep20435openalex-snapshot
Transcription Factor RFX2 Is a Key Regulator of Mouse Spermiogenesis
inferredcites →https://doi.org/10.1073/pnas.1505683112openalex-snapshot
Periodic retinoic acid–STRA8 signaling intersects with periodic germ-cell competencies to regulate spermatogenesis
inferredcites →https://doi.org/10.1083/jcb.74.1.68openalex-snapshot
Spermatogenic cells of the prepuberal mouse: isolation and morphological characterization
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/imanum/drs019openalex-snapshot
A fast algorithm for matrix balancing
inferredcites →https://doi.org/10.1093/nar/gkv1265openalex-snapshot
piRNA cluster database: a web resource for piRNA producing loci
inferredcites →https://doi.org/10.1093/nar/gkx897openalex-snapshot
Database Resources of the BIG Data Center in 2018
inferredcites →https://doi.org/10.1098/rstb.2009.0196openalex-snapshot
Transcription and post-transcriptional regulation of spermatogenesis
inferredcites →https://doi.org/10.1098/rstb.2009.0294openalex-snapshot
Testicular postgenomics: targeting the regulation of spermatogenesis
inferredcites →https://doi.org/10.1101/118737openalex-snapshot
Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
inferredcites →https://doi.org/10.1101/gad.210963.112openalex-snapshot
SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors
inferredcites →https://doi.org/10.1126/science.1067799openalex-snapshot
Capturing Chromosome Conformation
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1126/science.aao6135openalex-snapshot
A pathway for mitotic chromosome formation
inferredcites →https://doi.org/10.1126/science.aau1783openalex-snapshot
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
inferredcites →https://doi.org/10.1146/annurev-cellbio-100616-060531openalex-snapshot
The Three-Dimensional Organization of Mammalian Genomes
inferredcites →https://doi.org/10.1186/1471-2164-13-645openalex-snapshot
Limitations and possibilities of low cell number ChIP-seq
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2010-11-10-r106openalex-snapshot
Differential expression analysis for sequence count data
inferredcites →https://doi.org/10.1186/s13059-015-0831-xopenalex-snapshot
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
inferredcites →https://doi.org/10.1210/en.140.12.5894openalex-snapshot
Differential Expression of c-kit in Mouse Undifferentiated and Differentiating Type A Spermatogonia
inferredcites →https://doi.org/10.1242/dev.067645openalex-snapshot
A-MYB (MYBL1) transcription factor is a master regulator of male meiosis
inferredcites →https://doi.org/10.1242/dev.113.2.689openalex-snapshot
Role of c-kit in mouse spermatogenesis: identification of spermatogonia as a specific site of c-kit expression and function
inferredcites →https://doi.org/10.1371/journal.pgen.1006293openalex-snapshot
DMRT1 Is Required for Mouse Spermatogonial Stem Cell Maintenance and Replenishment
inferredcites →https://doi.org/10.1530/rep.0.1210347openalex-snapshot
Proliferation and differentiation of spermatogonial stem cells
inferredcites →https://doi.org/10.4161/spmg.27889openalex-snapshot
Mammalian piRNAs
inferredcites →https://doi.org/10.48550/arxiv.1111.5572openalex-snapshot
Faster and More Accurate Sequence Alignment with SNAP
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