On the public citation graph
Fully-sensitive Seed Finding in Sequence Graphs Using a Hybrid Index
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-319-07959-2_28openalex-snapshot
From Theory to Practice: Plug and Play with Succinct Data Structures
inferredcites →https://doi.org/10.1007/978-3-642-33122-0_18openalex-snapshot
Succinct de Bruijn Graphs
inferredcites →https://doi.org/10.1007/bf02458834openalex-snapshot
Approximate matching of regular expressions
inferredcites →https://doi.org/10.1016/0167-6423(95)00003-8openalex-snapshot
A comparison of imperative and purely functional suffix tree constructions
inferredcites →https://doi.org/10.1016/j.cell.2018.12.019openalex-snapshot
Characterizing the Major Structural Variant Alleles of the Human Genome
inferredcites →https://doi.org/10.1016/j.jbiotec.2017.07.017openalex-snapshot
The SeqAn C++ template library for efficient sequence analysis: A resource for programmers
inferredcites →https://doi.org/10.1016/s0304-3975(99)00333-3openalex-snapshot
Improved approximate pattern matching on hypertext
inferredcites →https://doi.org/10.1017/cbo9781139940023openalex-snapshot
Genome-Scale Algorithm Design
inferredcites →https://doi.org/10.1038/nature13907openalex-snapshot
Resolving the complexity of the human genome using single-molecule sequencing
inferredcites →https://doi.org/10.1038/nature15393openalex-snapshot
A global reference for human genetic variation
inferredcites →https://doi.org/10.1038/nbt.4227openalex-snapshot
Variation graph toolkit improves read mapping by representing genetic variation in the reference
inferredcites →https://doi.org/10.1038/ng.3257openalex-snapshot
Improved genome inference in the MHC using a population reference graph
inferredcites →https://doi.org/10.1038/ng.3964openalex-snapshot
Graphtyper enables population-scale genotyping using pangenome graphs
inferredcites →https://doi.org/10.1038/s41588-018-0316-4openalex-snapshot
Fast and accurate genomic analyses using genome graphs
inferredcites →https://doi.org/10.1089/cmb.2009.0169openalex-snapshot
Storage and Retrieval of Highly Repetitive Sequence Collections
inferredcites →https://doi.org/10.1093/bib/bbq015openalex-snapshot
A survey of sequence alignment algorithms for next-generation sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btz162openalex-snapshot
Bit-parallel sequence-to-graph alignment
inferredcites →https://doi.org/10.1101/193144openalex-snapshot
Multi-platform discovery of haplotype-resolved structural variation in human genomes
inferredcites →https://doi.org/10.1101/gr.214155.116openalex-snapshot
Genome graphs and the evolution of genome inference
inferredcites →https://doi.org/10.1109/tcbb.2013.2297101openalex-snapshot
Indexing Graphs for Path Queries with Applications in Genome Research
inferredcites →https://doi.org/10.1128/genomea.01604-15openalex-snapshot
Complete Genome Sequences of the Obligate Symbionts “ Candidatus Sulcia muelleri” and “ Ca. Nasuia deltocephalinicola” from the Pestiferous Leafhopper Macrosteles quadripunctulatus (Hemiptera: Cicadellidae)
inferredcites →https://doi.org/10.1134/s0006350918030193openalex-snapshot
An Efficient Algorithm for Mapping of Reads to a Genome Graph Using an Index Based on Hash Tables and Dynamic Programming
inferredcites →https://doi.org/10.1145/1613676.1613680openalex-snapshot
Compressing and indexing labeled trees, with applications
inferredcites →https://doi.org/10.1146/annurev-genom-090413-025358openalex-snapshot
Alignment of Next-Generation Sequencing Reads
inferredcites →https://doi.org/10.1186/1471-2105-14-313openalex-snapshot
Compact representation of k-mer de Bruijn graphs for genome read assembly
inferredcites →https://doi.org/10.1186/1471-2105-9-11openalex-snapshot
SeqAn An efficient, generic C++ library for sequence analysis
inferredcites →https://doi.org/10.1186/gb-2009-10-9-r98openalex-snapshot
Simultaneous alignment of short reads against multiple genomes
inferredcites →https://doi.org/10.1186/s12859-016-1103-9openalex-snapshot
Read mapping on de Bruijn graphs
inferredcites →https://doi.org/10.1186/s13059-015-0587-3openalex-snapshot
Extending reference assembly models
inferredcites →https://doi.org/10.1186/s13059-018-1595-xopenalex-snapshot
FORGe: prioritizing variants for graph genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1005151openalex-snapshot
High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs
inferredcites →https://doi.org/10.1371/journal.pone.0109384openalex-snapshot
Indexes of Large Genome Collections on a PC
inferredcites →https://doi.org/10.3389/fbioe.2015.00012openalex-snapshot
Searching and Indexing Genomic Databases via Kernelization
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1101/810812openalex-snapshot
GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment
inferred← citeshttps://doi.org/10.1186/s13059-020-01963-yopenalex-snapshot
CHOP: haplotype-aware path indexing in population graphs
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