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Tracing foot-and-mouth disease virus phylogeographical patterns and transmission dynamics

https://doi.org/10.1101/590612
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolutionary medicine
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Global Epidemiology and Prospects for Control of Foot-and-Mouth Disease
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The Food and Agriculture Organization (FAO)
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Distinctive features of foot-and-mouth disease virus, a member of the picornavirus family; aspects of virus protein synthesis, protein processing and structure
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Recent advances in computational phylodynamics
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The landscape epidemiology of foot-and-mouth disease in South Africa: A spatially explicit multi-agent simulation
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Phylogeography of foot-and-mouth disease virus types O and A in Malaysia and surrounding countries
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Phylogeography of foot-and-mouth disease virus serotype O in Ecuador
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Control of a foot-and-mouth disease epidemic in Argentina
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Foot and mouth disease virus transmission during the incubation period of the disease in piglets, lambs, calves, and dairy cows
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The economic impacts of foot and mouth disease – What are they, how big are they and where do they occur?
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Spatial and temporal epidemiology of porcine epidemic diarrhea (PED) in the Midwest and Southeast regions of the United States
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Genetic basis of antigenic variation in foot-and-mouth disease serotype A viruses from the Middle East
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The tale of a modern animal plague: Tracing the evolutionary history and determining the time-scale for foot and mouth disease virus
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Analysis of the leader proteinase (Lpro) region of type A foot-and-mouth disease virus with due emphasis on phylogeny and evolution of the emerging VP359-deletion lineage from India
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Anthropogenic environmental change and the emergence of infectious diseases in wildlife
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The Pathogenesis and Diagnosis of Foot-and-Mouth Disease
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The history of research in foot-and-mouth disease
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Emerging infectious disease: what are the relative roles of ecology and evolution?
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Epidemiology meets evolutionary ecology
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Molecular characterization of foot-and-mouth disease virus isolated from ruminants in Taiwan in 1999–2000
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Bayesian Evolutionary Analysis with BEAST
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Molecular Epidemiology of Serotype O Foot-and-Mouth Disease Virus with Emphasis on West and South Africa
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Emergence of a New Strain of Type O Foot-and-Mouth Disease Virus: Its Phylogenetic and Evolutionary Relationship with the PanAsia Pandemic Strain
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Transmission intensity and impact of control policies on the foot and mouth epidemic in Great Britain
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Origin and dispersal of Hepatitis E virus
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The current and future global distribution and population at risk of dengue
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A traditional evolutionary history of foot-and-mouth disease viruses in Southeast Asia challenged by analyses of non-structural protein coding sequences
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Reconstructing the evolutionary history of pandemic foot-and-mouth disease viruses: the impact of recombination within the emerging O/ME-SA/Ind-2001 lineage
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The evolution and phylodynamics of serotype A and SAT2 foot-and-mouth disease viruses in endemic regions of Africa
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Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences
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Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences
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SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes
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Using Viral Gene Sequences to Compare and Explain the Heterogeneous Spatial Dynamics of Virus Epidemics
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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
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Model Selection and Parameter Inference in Phylogenetics Using Nested Sampling
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RDP4: Detection and analysis of recombination patterns in virus genomes
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Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
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Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference
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Human drivers of ecological and evolutionary dynamics in emerging and disappearing infectious disease systems
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Persistent infection of African buffalo (Syncerus caffer) with SAT-type foot-and-mouth disease viruses: rate of fixation of mutations, antigenic change and interspecies transmission
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Comparisons of the complete genomes of Asian, African and European isolates of a recent foot-and-mouth disease virus type O pandemic strain (PanAsia)
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The Impact of Foot and Mouth Disease on the Price of Beef
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Status of Foot-and-mouth Disease in India
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Foot-and-Mouth Disease
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Serological Survey for Foot-and-Mouth Disease Virus in Wildlife in Eastern Africa and Estimation of Test Parameters of a Nonstructural Protein Enzyme-Linked Immunosorbent Assay for Buffalo
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Comparative Genomics of Foot-and-Mouth Disease Virus
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Reconstructing Geographical Movements and Host Species Transitions of Foot-and-Mouth Disease Virus Serotype SAT 2
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Natural adaption to pigs of a Taiwanese isolate of foot‐and‐mouth disease virus
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The role of African buffalos (syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda
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Combining livestock trade patterns with phylogenetics to help understand the spread of foot and mouth disease in sub-Saharan Africa, the Middle East and Southeast Asia
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Understanding the Molecular Relationship between Foot-and-Mouth Disease Virus Serotype O of Indian Vaccine Strain with Strains across the World by Phylogenetic Analysis
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Foot-and-Mouth Disease Virus Serotype SAT 3 in Long-Horned Ankole Calf, Uganda
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Evolutionary and Ecological Characterization of Mayaro Virus Strains Isolated during an Outbreak, Venezuela, 2010
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Phylogeographic Analysis and Identification of Factors Impacting the Diffusion of Foot-and-Mouth Disease Virus in Africa
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Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Aptamer-linked immobilized sorbent assay for detection of VP1 of foot and mouth disease virus serotype O
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Epidemiology and economics of foot-and-mouth disease: current understanding and knowledge gaps
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An Overview of Epidemiological Tools That Support the Progress of Foot-and-Mouth Disease Control in Southeast Asia
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Genomic Diversity and Geographic Distribution of Newcastle Disease Virus Genotypes in Africa: Implications for Diagnosis, Vaccination, and Regional Collaboration
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