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Time-resolved RNA-seq profiling of the infection of Dictyostelium discoideum by Mycobacterium marinum reveals an integrated host response to damage and stress

https://doi.org/10.1101/590810
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/abio.1987.9999openalex-snapshot
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction
inferredcites →https://doi.org/10.1016/0003-2697(87)90021-2openalex-snapshot
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
inferredcites →https://doi.org/10.1016/j.ceb.2015.06.005openalex-snapshot
Chemotaxis of a model organism: progress with Dictyostelium
inferredcites →https://doi.org/10.1016/j.cels.2015.12.004openalex-snapshot
The Molecular Signatures Database Hallmark Gene Set Collection
inferredcites →https://doi.org/10.1016/j.chom.2011.08.006openalex-snapshot
Mycobacterial P1-Type ATPases Mediate Resistance to Zinc Poisoning in Human Macrophages
inferredcites →https://doi.org/10.1016/j.mib.2008.05.005openalex-snapshot
Eat, kill or die: when amoeba meets bacteria
inferredcites →https://doi.org/10.1016/j.molcel.2014.05.021openalex-snapshot
WIPI2 Links LC3 Conjugation with PI3P, Autophagosome Formation, and Pathogen Clearance by Recruiting Atg12–5-16L1
inferredcites →https://doi.org/10.1016/j.ydbio.2015.03.016openalex-snapshot
Genetic control of morphogenesis in Dictyostelium
inferredcites →https://doi.org/10.1016/s1937-6448(08)01206-9openalex-snapshot
Chapter 6 Phagocytosis and Host–Pathogen Interactions in Dictyostelium with a Look at Macrophages
inferredcites →https://doi.org/10.1038/msb.2010.80openalex-snapshot
Molecular characterization of the evolution of phagosomes
inferredcites →https://doi.org/10.1038/nature03481openalex-snapshot
The genome of the social amoeba Dictyostelium discoideum
inferredcites →https://doi.org/10.1038/nature16547openalex-snapshot
Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
inferredcites →https://doi.org/10.1038/ncomms15637openalex-snapshot
WIPI3 and WIPI4 β-propellers are scaffolds for LKB1-AMPK-TSC signalling circuits in the control of autophagy
inferredcites →https://doi.org/10.1038/nrmicro3349openalex-snapshot
Nitrogen metabolism in Mycobacterium tuberculosis physiology and virulence
inferredcites →https://doi.org/10.1038/s41598-017-06099-xopenalex-snapshot
Active nuclear transcriptome analysis reveals inflammasome-dependent mechanism for early neutrophil response to Mycobacterium marinum
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.02779.xopenalex-snapshot
Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling
inferredcites →https://doi.org/10.1093/nar/gkn844openalex-snapshot
dictyBase—a Dictyostelium bioinformatics resource update
inferredcites →https://doi.org/10.1101/582049openalex-snapshot
Dictyostelium discoideum flotillin homologues are essential for phagocytosis and participate in plasma membrane recycling and lysosome biogenesis
inferredcites →https://doi.org/10.1101/gr.075069.107openalex-snapshot
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis
inferredcites →https://doi.org/10.1111/cmi.12437openalex-snapshot
Lipid droplet dynamics at early stages of M ycobacterium marinum infection in D ictyostelium
inferredcites →https://doi.org/10.1111/cmi.13008openalex-snapshot
Distinct Mycobacterium marinum phosphatases determine pathogen vacuole phosphoinositide pattern, phagosome maturation, and escape to the cytosol
inferredcites →https://doi.org/10.1111/j.1462-5822.2005.00493.xopenalex-snapshot
Dictyostelium as host model for pathogenesis
inferredcites →https://doi.org/10.1111/j.1462-5822.2007.00993.xopenalex-snapshot
Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection
inferredcites →https://doi.org/10.1111/j.1462-5822.2008.01133.xopenalex-snapshot
Comparative pathogenesis of Mycobacterium marinum and Mycobacterium tuberculosis
inferredcites →https://doi.org/10.1111/j.1462-5822.2011.01581.xopenalex-snapshot
Mycobacterium marinum induces a marked LC3 recruitment to its containing phagosome that depends on a functional ESX-1 secretion system
inferredcites →https://doi.org/10.1111/j.1600-0854.2012.01358.xopenalex-snapshot
Mycobacteria and the Intraphagosomal Environment: Take It With a Pinch of Salt(s)!
inferredcites →https://doi.org/10.1128/iai.00072-16openalex-snapshot
Transcriptional Profiling of Mycobacterium tuberculosis Exposed toIn VitroLysosomal Stress
inferredcites →https://doi.org/10.1128/iai.71.6.3578-3586.2003openalex-snapshot
Intracellular Replication of Mycobacterium marinum within Dictyostelium discoideum : Efficient Replication in the Absence of Host Coronin
inferredcites →https://doi.org/10.1128/mbio.00100-11openalex-snapshot
Characterization and Transcriptome Analysis of Mycobacterium tuberculosis Persisters
inferredcites →https://doi.org/10.1128/mbio.01313-20openalex-snapshot
Zn 2+ Intoxication of Mycobacterium marinum during Dictyostelium discoideum Infection Is Counteracted by Induction of the Pathogen Zn 2+ Exporter CtpC
inferredcites →https://doi.org/10.1183/13993003.02308-2016openalex-snapshot
World Health Organization treatment guidelines for drug-resistant tuberculosis, 2016 update
inferredcites →https://doi.org/10.1186/s12864-014-1197-2openalex-snapshot
Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing
inferredcites →https://doi.org/10.1242/jcs.164848openalex-snapshot
TM9 family proteins control surface targeting of glycine-rich transmembrane domains
inferredcites →https://doi.org/10.1242/jcs.222000openalex-snapshot
Localization of all four ZnT zinc transporters in Dictyostelium and impact of ZntA and ZntB knockout on bacteria killing
inferredcites →https://doi.org/10.1371/journal.pone.0041618openalex-snapshot
Polymorphisms in Autophagy Genes and Susceptibility to Tuberculosis
inferredcites →https://doi.org/10.1371/journal.pone.0058126openalex-snapshot
Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs
inferredcites →https://doi.org/10.1371/journal.ppat.1002769openalex-snapshot
Linking the Transcriptional Profiles and the Physiological States of Mycobacterium tuberculosis during an Extended Intracellular Infection
inferredcites →https://doi.org/10.1371/journal.ppat.1006033openalex-snapshot
Resolving host–pathogen interactions by dual RNA-seq
inferredcites →https://doi.org/10.1371/journal.ppat.1006095openalex-snapshot
Mycobacterium marinum Degrades Both Triacylglycerols and Phospholipids from Its Dictyostelium Host to Synthesise Its Own Triacylglycerols and Generate Lipid Inclusions
inferredcites →https://doi.org/10.1371/journal.ppat.1006344openalex-snapshot
Mycobacterium marinum antagonistically induces an autophagic response while repressing the autophagic flux in a TORC1- and ESX-1-dependent manner
inferredcites →https://doi.org/10.1371/journal.ppat.1007501openalex-snapshot
The ESCRT and autophagy machineries cooperate to repair ESX-1-dependent damage at the Mycobacterium-containing vacuole but have opposite impact on containing the infection
inferredcites →https://doi.org/10.21775/cimb.021.063openalex-snapshot
Mycobacteria and Autophagy: Many Questions and Few Answers
inferredcites →https://doi.org/10.3389/fcimb.2013.00050openalex-snapshot
Iron metabolism and resistance to infection by invasive bacteria in the social amoeba Dictyostelium discoideum
inferredcites →https://doi.org/10.3389/fcimb.2013.00062openalex-snapshot
Mycobacterium tuberculosis and the host cell inflammasome: a complex relationship
inferredcites →https://doi.org/10.3389/fcimb.2017.00529openalex-snapshot
When Dicty Met Myco, a (Not So) Romantic Story about One Amoeba and Its Intracellular Pathogen
inferredcites →https://doi.org/10.3389/fimmu.2017.01906openalex-snapshot
Eat Prey, Live: Dictyostelium discoideum As a Model for Cell-Autonomous Defenses
inferredcites →https://doi.org/10.3389/fmicb.2020.00266openalex-snapshot
Identification of Anti-Mycobacterium and Anti-Legionella Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/b978-0-443-36518-8.00021-7openalex-snapshot
Innovative platforms for drug discovery against mycobacteria: The success and challenges
inferred← citeshttps://doi.org/10.1093/ismehm/aazag007openalex-snapshot
Mechanisms of association with amoeba hosts are shared by Paraburkholderia symbionts amid differential responses based on evolutionary history
inferred← citeshttps://doi.org/10.1101/2021.11.16.468763openalex-snapshot
Disruption of vacuolin microdomains in the host Dictyostelium discoideum increases resistance to Mycobacterium marinum -induced membrane damage and infection
inferred← citeshttps://doi.org/10.1101/2023.03.22.533734openalex-snapshot
Temporal genome-wide fitness analysis of Mycobacterium marinum during infection reveals genetic requirement for virulence and survival in amoebae and microglial cells
inferred← citeshttps://doi.org/10.1101/2024.08.19.608731openalex-snapshot
Membrane microdomains are crucial for Mycobacterium marinum EsxA-dependent membrane damage, escape to the cytosol and infection
inferred← citeshttps://doi.org/10.1101/2024.12.03.626613openalex-snapshot
The Dictyostelium discoideum – Mycobacterium marinum infection model, a powerful high throughput screening platform for anti-infective compounds
inferred← citeshttps://doi.org/10.1101/2025.11.13.687818openalex-snapshot
Mycobacterial surface shedding drives bystander cells response during early intracellular infection
inferred← citeshttps://doi.org/10.1126/sciadv.ady0812openalex-snapshot
Membrane microdomains are crucial for Mycobacterium marinum EsxA-dependent membrane damage, escape to the cytosol, and infection
inferred← citeshttps://doi.org/10.1128/mbio.00943-23openalex-snapshot
ER-dependent membrane repair of mycobacteria-induced vacuole damage
inferred← citeshttps://doi.org/10.1128/mbio.01313-20openalex-snapshot
Zn 2+ Intoxication of Mycobacterium marinum during Dictyostelium discoideum Infection Is Counteracted by Induction of the Pathogen Zn 2+ Exporter CtpC
inferred← citeshttps://doi.org/10.1128/msystems.01326-23openalex-snapshot
Temporal genome-wide fitness analysis of Mycobacterium marinum during infection reveals the genetic requirement for virulence and survival in amoebae and microglial cells
inferred← citeshttps://doi.org/10.1242/jcs.242974openalex-snapshot
Vacuolins and myosin VII are required for phagocytic uptake and phagosomal membrane recycling in Dictyostelium discoideum
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00410openalex-snapshot
Transcriptional Responses of Dictyostelium discoideum Exposed to Different Classes of Bacteria
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1612354openalex-snapshot
Dictyosteliumdiscoideum–Mycobacterium marinum infection model: a powerful high-throughput screening platform for anti-infective compounds
inferred← citeshttps://doi.org/10.64898/2026.06.09.729547openalex-snapshot
STAT transcription factors regulate host defences and vacuolar integrity during Mycobacterium marinum infection
inferred← citeshttps://doi.org/10.7554/elife.85727openalex-snapshot
A TRAF-like E3 ubiquitin ligase TrafE coordinates ESCRT and autophagy in endolysosomal damage response and cell-autonomous immunity to Mycobacterium marinum
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