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Contingent Convergence: The ability to detect convergent genomic evolution is dependent on population size and migration

https://doi.org/10.1101/592105
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Genomic divergence between Spanish Littorina saxatilis ecotypes unravels limited admixture and extensive parallelism associated with population history
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A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks
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Thinking too positive? Revisiting current methods of population genetic selection inference
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Population size and the rate of evolution
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The hitch-hiking effect of a favourable gene
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Background selection and patterns of genetic diversity inDrosophila melanogaster
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Effective population size/adult population size ratios in wildlife: a review
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The hitch-hiking effect of a favourable gene
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Efective population size/adult population size ratios in wildlife: a review
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The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
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A coalescent model of background selection with recombination, demography and variation in selection coefficients
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European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
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SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model
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Measures of divergence between populations and the effect of forces that reduce variability
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Factors influencing the effect size distribution of adaptive substitutions
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Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting
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Background selection and the statistics of population differentiation: consequences for detecting local adaptation
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Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
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The multiple population genetic and demographic routes to islands of genomic divergence
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THE ECOLOGY AND GENETICS OF FITNESS IN CHLAMYDOMONAS. XII. REPEATED SEXUAL EPISODES INCREASE RATES OF ADAPTATION TO NOVEL ENVIRONMENTS
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Divergent selection and heterogeneous genomic divergence
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THE IMPACT OF PREDATION ON LIFE HISTORY EVOLUTION IN TRINIDADIAN GUPPIES ( POECILIA RETICULATA )
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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ADAPTATION TO DIFFERENT RATES OF ENVIRONMENTAL CHANGE IN CHLAMYDOMONAS
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ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT
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Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
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Parallelism in genomic landscapes of differentiation, conserved genomic features and the role of linked selection
inferredcites →https://doi.org/10.1111/mec.12311openalex-snapshot
Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.12883openalex-snapshot
Do the same genes underlie parallel phenotypic divergence in different L ittorina saxatilis populations?
inferredcites →https://doi.org/10.1111/mec.13022openalex-snapshot
Population genomics of natural and experimental populations of guppies ( Poecilia reticulata )
inferredcites →https://doi.org/10.1111/mec.13332openalex-snapshot
Shared and nonshared genomic divergence in parallel ecotypes of L ittorina saxatilis at a local scale
inferredcites →https://doi.org/10.1111/mec.13664openalex-snapshot
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes
inferredcites →https://doi.org/10.1111/mec.13792openalex-snapshot
Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species
inferredcites →https://doi.org/10.1111/mec.14083openalex-snapshot
Correlated patterns of genetic diversity and differentiation across an avian family
inferredcites →https://doi.org/10.1111/mec.14116openalex-snapshot
Genomic evidence for convergent evolution of a key trait underlying divergence in island birds
inferredcites →https://doi.org/10.1111/mec.14167openalex-snapshot
Linked selection, demography and the evolution of correlated genomic landscapes in birds and beyond
inferredcites →https://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
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The search for loci under selection: trends, biases and progress
inferredcites →https://doi.org/10.1111/mec.14701openalex-snapshot
Adaptive population divergence and directional gene flow across steep elevational gradients in a climate‐sensitive mammal
inferredcites →https://doi.org/10.1111/mec.15197openalex-snapshot
Background selection and F ST : Consequences for detecting local adaptation
inferredcites →https://doi.org/10.1111/nph.14722openalex-snapshot
Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae)
inferredcites →https://doi.org/10.1111/nyas.14177openalex-snapshot
What can be learned by scanning the genome for molecular convergence in wild populations?
inferredcites →https://doi.org/10.1126/sciadv.aav9963openalex-snapshot
Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast
inferredcites →https://doi.org/10.1126/science.1252136openalex-snapshot
Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation
inferredcites →https://doi.org/10.1126/science.aac9927openalex-snapshot
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
inferredcites →https://doi.org/10.1126/science.aah4993openalex-snapshot
The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish
inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot
Genomic Islands of Speciation in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pbio.3000391openalex-snapshot
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers
inferredcites →https://doi.org/10.1371/journal.pgen.1000008openalex-snapshot
Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1000495openalex-snapshot
Pervasive Natural Selection in the Drosophila Genome?
inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
inferredcites →https://doi.org/10.1371/journal.pgen.1005397openalex-snapshot
Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference
inferredcites →https://doi.org/10.1371/journal.pgen.1007387openalex-snapshot
Human demographic history has amplified the effects of background selection across the genome
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Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution
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Opposite Effects of mGluR1a and mGluR5 Activation on Nucleus Accumbens Medium Spiny Neuron Dendritic Spine Density
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The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population
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Chromosome Inversions, Local Adaptation and Speciation
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Quantifying the Variation in the Effective Population Size Within a Genome
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inferred← citeshttps://doi.org/10.1371/journal.pgen.1009566openalex-snapshot
Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies
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