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Gene-methylation interactions: Discovering region-wise DNA methylation levels that modify SNP-associated disease risk
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/bdra.20747openalex-snapshot
Fetal genetic risk of isolated cleft lip only versus isolated cleft lip and palate: A subphenotype analysis using two population-based studies of orofacial clefts in scandinavia
inferredcites →https://doi.org/10.1002/sim.4780130206openalex-snapshot
Non‐hierarchical logistic models and case‐only designs for assessing susceptibility in population‐based case‐control studies
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1007/s40142-014-0058-2openalex-snapshot
The Influences of Genetic and Environmental Factors on Methylome-Wide Association Studies for Human Diseases
inferredcites →https://doi.org/10.1016/j.ajhg.2015.05.014openalex-snapshot
Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations
inferredcites →https://doi.org/10.1016/j.ccr.2014.07.028openalex-snapshot
Gene Body Methylation Can Alter Gene Expression and Is a Therapeutic Target in Cancer
inferredcites →https://doi.org/10.1016/j.molmed.2011.07.007openalex-snapshot
Breakthroughs in the genetics of orofacial clefting
inferredcites →https://doi.org/10.1016/j.pnpbp.2017.03.012openalex-snapshot
Genetic variation and epigenetic modification of the prodynorphin gene in peripheral blood cells in alcoholism
inferredcites →https://doi.org/10.1016/j.tig.2004.06.009openalex-snapshot
An integrated epigenetic and genetic approach to common human disease
inferredcites →https://doi.org/10.1038/cr.2012.15openalex-snapshot
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
inferredcites →https://doi.org/10.1038/nature09165openalex-snapshot
Conserved role of intragenic DNA methylation in regulating alternative promoters
inferredcites →https://doi.org/10.1038/nature12433openalex-snapshot
Charting a dynamic DNA methylation landscape of the human genome
inferredcites →https://doi.org/10.1038/nature14192openalex-snapshot
Function and information content of DNA methylation
inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot
Integrative analysis of 111 reference human epigenomes
inferredcites →https://doi.org/10.1038/nature14465openalex-snapshot
Human body epigenome maps reveal noncanonical DNA methylation variation
inferredcites →https://doi.org/10.1038/ng.333openalex-snapshot
Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24
inferredcites →https://doi.org/10.1038/ng.580openalex-snapshot
A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4
inferredcites →https://doi.org/10.1038/nprot.2009.97openalex-snapshot
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
inferredcites →https://doi.org/10.1038/nrg.2016.83openalex-snapshot
Transcription factors as readers and effectors of DNA methylation
inferredcites →https://doi.org/10.1038/nrg.2017.80openalex-snapshot
The DNA methyltransferase family: a versatile toolkit for epigenetic regulation
inferredcites →https://doi.org/10.1038/nrg.2017.86openalex-snapshot
Statistical and integrative system-level analysis of DNA methylation data
inferredcites →https://doi.org/10.1038/nrg2933openalex-snapshot
Cleft lip and palate: understanding genetic and environmental influences
inferredcites →https://doi.org/10.1038/nrg3230openalex-snapshot
Functions of DNA methylation: islands, start sites, gene bodies and beyond
inferredcites →https://doi.org/10.1038/nrg3273openalex-snapshot
Analysing and interpreting DNA methylation data
inferredcites →https://doi.org/10.1038/s41576-018-0092-0openalex-snapshot
Genomic imprinting disorders: lessons on how genome, epigenome and environment interact
inferredcites →https://doi.org/10.1038/s41588-017-0007-6openalex-snapshot
Single-cell DNA methylome sequencing of human preimplantation embryos
inferredcites →https://doi.org/10.1038/s41591-018-0237-xopenalex-snapshot
Longitudinal personal DNA methylome dynamics in a human with a chronic condition
inferredcites →https://doi.org/10.1086/301802openalex-snapshot
A Log-Linear Approach to Case-Parent–Triad Data: Assessing Effects of Disease Genes That Act Either Directly or through Maternal Effects and That May Be Subject to Parental Imprinting
inferredcites →https://doi.org/10.1086/302466openalex-snapshot
Methods for Detection of Parent-of-Origin Effects in Genetic Studies of Case-Parents Triads
inferredcites →https://doi.org/10.1086/302707openalex-snapshot
The Use of Case-Parent Triads to Study Joint Effects of Genotype and Exposure
inferredcites →https://doi.org/10.1093/bfgp/elw029openalex-snapshot
DNA methylation dynamics: identification and functional annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btw304openalex-snapshot
seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data
inferredcites →https://doi.org/10.1093/bioinformatics/btz134openalex-snapshot
Missing value estimation methods for DNA methylation data
inferredcites →https://doi.org/10.1093/database/bax028openalex-snapshot
GeneHancer: genome-wide integration of enhancers and target genes in GeneCards
inferredcites →https://doi.org/10.1093/hmg/ddp444openalex-snapshot
FOXE1 association with both isolated cleft lip with or without cleft palate, and isolated cleft palate
inferredcites →https://doi.org/10.1093/hmg/ddy206openalex-snapshot
Genome-wide survey of parent-of-origin effects on DNA methylation identifies candidate imprinted loci in humans
inferredcites →https://doi.org/10.1093/ije/dyr238openalex-snapshot
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
inferredcites →https://doi.org/10.1093/nar/gku1303openalex-snapshot
Microarrays for identifying binding sites and probing structure of RNAs
inferredcites →https://doi.org/10.1093/nar/gkv715openalex-snapshot
Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
inferredcites →https://doi.org/10.1093/nar/gkw124openalex-snapshot
DNA methylation in human epigenomes depends on local topology of CpG sites
inferredcites →https://doi.org/10.1093/nar/gkw258openalex-snapshot
Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved
inferredcites →https://doi.org/10.1093/sleep/zsw011openalex-snapshot
Common Genetic Variation Near Melatonin Receptor 1A Gene Linked to Job-Related Exhaustion in Shift Workers
inferredcites →https://doi.org/10.1101/250068openalex-snapshot
The effect of education on adult mortality, health, and income: triangulating across genetic and policy reforms
inferredcites →https://doi.org/10.1111/ahg.12224openalex-snapshot
Parent‐of‐origin‐environment interactions in case‐parent triads with or without independent controls
inferredcites →https://doi.org/10.1111/j.1469-1809.2012.00707.xopenalex-snapshot
Application of a Novel Hybrid Study Design to Explore Gene‐Environment Interactions in Orofacial Clefts
inferredcites →https://doi.org/10.1111/j.1529-8817.2005.00218.xopenalex-snapshot
Case‐parent Triads: Estimating Single‐ and Double‐dose Effects of Fetal and Maternal Disease Gene Haplotypes
inferredcites →https://doi.org/10.1111/j.1601-0825.2009.01587.xopenalex-snapshot
Folic acid and orofacial clefts: a review of the evidence
inferredcites →https://doi.org/10.1136/bmj.39079.618287.0bopenalex-snapshot
Folic acid supplements and risk of facial clefts: national population based case-control study
inferredcites →https://doi.org/10.1159/000328006openalex-snapshot
Methods for Detecting Interactions between Imprinted Genes and Environmental Exposures Using Birth Cohort Designs with Mother-Offspring Pairs
inferredcites →https://doi.org/10.1177/0022034517716914openalex-snapshot
A Population-Based Study of Effects of Genetic Loci on Orofacial Clefts
inferredcites →https://doi.org/10.1186/1756-8935-8-6openalex-snapshot
De novo identification of differentially methylated regions in the human genome
inferredcites →https://doi.org/10.1186/1868-7083-5-1openalex-snapshot
The interaction of genetic variants and DNA methylation of the interleukin-4 receptor gene increase the risk of asthma at age 18 years
inferredcites →https://doi.org/10.1186/gb-2005-6-5-r44openalex-snapshot
The Sequence Ontology: a tool for the unification of genome annotations
inferredcites →https://doi.org/10.1186/s12916-017-0800-1openalex-snapshot
Developmental pathways to adiposity begin before birth and are influenced by genotype, prenatal environment and epigenome
inferredcites →https://doi.org/10.1186/s12920-016-0235-0openalex-snapshot
DNA methylation patterns associated with oxidative stress in an ageing population
inferredcites →https://doi.org/10.1186/s13059-015-0866-zopenalex-snapshot
Ancient DNA and the rewriting of human history: be sparing with Occam’s razor
inferredcites →https://doi.org/10.1186/s13059-016-1066-1openalex-snapshot
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
inferredcites →https://doi.org/10.1186/s13072-018-0205-1openalex-snapshot
Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species
inferredcites →https://doi.org/10.1186/s13148-016-0212-7openalex-snapshot
Establishing an analytic pipeline for genome-wide DNA methylation
inferredcites →https://doi.org/10.1186/s13148-017-0362-2openalex-snapshot
Distinct DNA methylation profiles in subtypes of orofacial cleft
inferredcites →https://doi.org/10.1186/s13148-019-0638-9openalex-snapshot
A comparison of DNA methylation in newborn blood samples from infants with and without orofacial clefts
inferredcites →https://doi.org/10.1371/journal.pmed.1002287openalex-snapshot
Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data
inferredcites →https://doi.org/10.1371/journal.pone.0005385openalex-snapshot
Genetic Determinants of Facial Clefting: Analysis of 357 Candidate Genes Using Two National Cleft Studies from Scandinavia
inferredcites →https://doi.org/10.1371/journal.pone.0014524openalex-snapshot
DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing
inferredcites →https://doi.org/10.1597/10-178openalex-snapshot
Genetics of Nonsyndromic Orofacial Clefts
inferredcites →https://doi.org/10.2217/epi.11.105openalex-snapshot
Evaluation of the Infinium Methylation 450K technology
inferredcites →https://doi.org/10.3233/jad-170007openalex-snapshot
DNA Methylation and Tag SNPs of the BDNF Gene in Conversion of Amnestic Mild Cognitive Impairment into Alzheimer’s Disease: A Cross-Sectional Cohort Study
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fgene.2018.00060openalex-snapshot
A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG
inferredcites →https://doi.org/10.4137/cin.s39783openalex-snapshot
Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis
inferredcites →https://doi.org/10.7554/elife.00247openalex-snapshot
Tissue absence initiates regeneration through Follistatin-mediated inhibition of Activin signaling
inferredcites →https://doi.org/10.7554/elife.00523openalex-snapshot
Passive and active DNA methylation and the interplay with genetic variation in gene regulation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/b978-0-12-819414-0.00028-8openalex-snapshot
Recent advances in computational-based approaches in epigenetics studies
inferred← citeshttps://doi.org/10.3389/fgene.2020.576377openalex-snapshot
THI Modulation of Genetic and Non-genetic Variance Components for Carcass Traits in Hanwoo Cattle
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