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The complex genetic architecture of recombination and structural variation in wheat uncovered using a large 8-founder MAGIC population

https://doi.org/10.1101/594317
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00223462openalex-snapshot
Chromosome substitutions of Triticum timopheevii in common wheat and some observations on the evolution of polyploid wheat species
inferredcites →https://doi.org/10.1007/s00122-014-2337-4openalex-snapshot
Whole-genome QTL analysis for MAGIC
inferredcites →https://doi.org/10.1007/s00122-014-2401-0openalex-snapshot
Computationally efficient map construction in the presence of segregation distortion
inferredcites →https://doi.org/10.1007/s00122-015-2506-0openalex-snapshot
MAGIC populations in crops: current status and future prospects
inferredcites →https://doi.org/10.1007/s10654-016-0149-3openalex-snapshot
Statistical tests, P values, confidence intervals, and power: a guide to misinterpretations
inferredcites →https://doi.org/10.1007/s11032-015-0284-7openalex-snapshot
Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept
inferredcites →https://doi.org/10.1007/s11103-012-9881-6openalex-snapshot
Divergent functions of orthologous NAC transcription factors in wheat and rice
inferredcites →https://doi.org/10.1007/s11336-007-9049-5openalex-snapshot
Heuristic Implementation of Dynamic Programming for Matrix Permutation Problems in Combinatorial Data Analysis
inferredcites →https://doi.org/10.1016/j.pbi.2008.01.002openalex-snapshot
From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants
inferredcites →https://doi.org/10.1038/nature12678openalex-snapshot
Genetic incompatibilities are widespread within species
inferredcites →https://doi.org/10.1073/pnas.1217133110openalex-snapshot
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
inferredcites →https://doi.org/10.1093/bioinformatics/btq719openalex-snapshot
R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines
inferredcites →https://doi.org/10.1101/481101openalex-snapshot
Heterozygote calling in significantly inbred populations
inferredcites →https://doi.org/10.1101/gr.5402306openalex-snapshot
High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping
inferredcites →https://doi.org/10.1111/j.1467-7652.2012.00702.xopenalex-snapshot
A multiparent advanced generation inter‐cross population for genetic analysis in wheat
inferredcites →https://doi.org/10.1111/pbi.12130openalex-snapshot
Use of a large multiparent wheat mapping population in genomic dissection of coleoptile and seedling growth
inferredcites →https://doi.org/10.1111/pbi.12183openalex-snapshot
Characterization of polyploid wheat genomic diversity using a high‐density 90 000 single nucleotide polymorphism array
inferredcites →https://doi.org/10.1111/pbi.12282openalex-snapshot
Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era
inferredcites →https://doi.org/10.1111/pbi.12424openalex-snapshot
A multiparental cross population for mapping QTL for agronomic traits in durum wheat ( T riticum turgidum ssp. durum)
inferredcites →https://doi.org/10.1111/pbi.12504openalex-snapshot
A highly recombined, high‐density, eight‐founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments
inferredcites →https://doi.org/10.1111/tpj.14009openalex-snapshot
The genetic architecture of genome‐wide recombination rate variation in allopolyploid wheat revealed by nested association mapping
inferredcites →https://doi.org/10.1126/science.1133649openalex-snapshot
A NAC Gene Regulating Senescence Improves Grain Protein, Zinc, and Iron Content in Wheat
inferredcites →https://doi.org/10.1126/science.1249721openalex-snapshot
Structural and functional partitioning of bread wheat chromosome 3B
inferredcites →https://doi.org/10.1126/science.aar6089openalex-snapshot
The transcriptional landscape of polyploid wheat
inferredcites →https://doi.org/10.1139/g96-040openalex-snapshot
Genome differentiation in Aegilops . 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species
inferredcites →https://doi.org/10.1186/1471-2164-15-708openalex-snapshot
Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly
inferredcites →https://doi.org/10.1186/1939-8433-6-1openalex-snapshot
Proteomic analysis of a disease-resistance-enhanced lesion mimic mutant spotted leaf 5 in rice
inferredcites →https://doi.org/10.1186/s12864-015-1424-5openalex-snapshot
A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits
inferredcites →https://doi.org/10.1186/s12864-018-4915-3openalex-snapshot
Adaptive selection of founder segments and epistatic control of plant height in the MAGIC winter wheat population WM-800
inferredcites →https://doi.org/10.1186/s13059-015-0582-8openalex-snapshot
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
inferredcites →https://doi.org/10.1186/s13059-015-0665-6openalex-snapshot
Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL
inferredcites →https://doi.org/10.1186/s13059-018-1475-4openalex-snapshot
Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome
inferredcites →https://doi.org/10.1371/journal.pgen.1000551openalex-snapshot
A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pgen.1004850openalex-snapshot
A Multi-Megabase Copy Number Gain Causes Maternal Transmission Ratio Distortion on Mouse Chromosome 2
inferredcites →https://doi.org/10.1371/journal.pgen.1005378openalex-snapshot
The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study
inferredcites →https://doi.org/10.1371/journal.pone.0032253openalex-snapshot
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
inferredcites →https://doi.org/10.1371/journal.pone.0035495openalex-snapshot
Perceptions and Experiences of Research Participants on Gender-Based Violence Community Based Survey: Implications for Ethical Guidelines
inferredcites →https://doi.org/10.1534/g3.113.005819openalex-snapshot
Sequence-Based Mapping of the Polyploid Wheat Genome
inferredcites →https://doi.org/10.1534/g3.114.011197openalex-snapshot
FluorescenceIn SituHybridization and Optical Mapping to Correct Scaffold Arrangement in the Tomato Genome
inferredcites →https://doi.org/10.1534/g3.114.012963openalex-snapshot
An Eight-Parent Multiparent Advanced Generation Inter-Cross Population for Winter-Sown Wheat: Creation, Properties, and Validation
inferredcites →https://doi.org/10.1534/g3.117.300550openalex-snapshot
Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)
inferredcites →https://doi.org/10.1534/genetics.104.039313openalex-snapshot
Simulating the Collaborative Cross: Power of Quantitative Trait Loci Detection and Mapping Resolution in Large Sets of Recombinant Inbred Strains of Mice
inferredcites →https://doi.org/10.1534/genetics.106.064063openalex-snapshot
Haplotype Probabilities for Multiple-Strain Recombinant Inbred Lines
inferredcites →https://doi.org/10.1534/genetics.111.132647openalex-snapshot
Genotype Probabilities at Intermediate Generations in the Construction of Recombinant Inbred Lines
inferredcites →https://doi.org/10.1534/genetics.117.300546openalex-snapshot
Detection of Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley MAGIC Population
inferredcites →https://doi.org/10.18637/jss.v025.i03openalex-snapshot
Getting Things in Order: An Introduction to theRPackageseriation
inferredcites →https://doi.org/10.18637/jss.v053.i09openalex-snapshot
fastcluster : Fast Hierarchical, Agglomerative Clustering Routines for R and Python
inferredcites →https://doi.org/10.18637/jss.v053.i11openalex-snapshot
A Distributed Procedure for Computing Stochastic Expansions withMathematica
inferredcites →https://doi.org/10.2135/cropsci2007.04.0204openalex-snapshot
Diagnostic Microsatellite Markers for the Detection of Stem Rust Resistance Gene Sr36 in Diverse Genetic Backgrounds of Wheat
inferredcites →https://doi.org/10.25919/5c00c0533733fopenalex-snapshot
8-way MAGIC map and genetic data
inferredcites →https://doi.org/10.3390/agronomy2030199openalex-snapshot
Impact of Genomic Technologies on Chickpea Breeding Strategies
inferredcites →https://doi.org/10.5281/zenodo.2613113openalex-snapshot
Map construction using multi-parent populations
inferredcites →https://doi.org/10.5281/zenodo.2613125openalex-snapshot
Interactive visualization and construction of genetic linkage maps

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/csc2.20091openalex-snapshot
Ms3 dominant genetic male sterility for wheat improvement with molecular breeding
inferred← citeshttps://doi.org/10.1007/978-3-031-38294-9_15openalex-snapshot
Genome-Wide Resources for Genetic Locus Discovery and Gene Functional Analysis in Wheat
inferred← citeshttps://doi.org/10.1007/s00122-026-05364-wopenalex-snapshot
Genetic dissection of grain yield and correlated proxy traits under suboptimal conditions
inferred← citeshttps://doi.org/10.1038/s41437-020-0336-6openalex-snapshot
Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa295openalex-snapshot
Accurate calling of homeoallelic genotypes of iSelect markers using inbred structured populations
inferred← citeshttps://doi.org/10.1093/g3journal/jkab295openalex-snapshot
Crafting for a better MAGIC: systematic design and test for Multiparental Advanced Generation Inter-Cross population
inferred← citeshttps://doi.org/10.1111/pbr.70017openalex-snapshot
Genome‐Wide Association Studies for Next‐Generation Crop Breeding in the Postgenomic Era
inferred← citeshttps://doi.org/10.3390/biology9080229openalex-snapshot
The Dawn of the Age of Multi-Parent MAGIC Populations in Plant Breeding: Novel Powerful Next-Generation Resources for Genetic Analysis and Selection of Recombinant Elite Material
inferred← citeshttps://doi.org/10.4995/thesis/10251/188916openalex-snapshot
Development and use of introgression populations for the detection of QTL related to important agronomic traits in eggplant
inferred← citeshttps://doi.org/10.7287/peerj.preprints.26877v2openalex-snapshot
A roadmap for gene functional characterisation in wheat
inferred← citeshttps://doi.org/10.7554/elife.55646openalex-snapshot
A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat
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